BAC Information

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BAC

Clone NameMSMg01-203P13
Chromosome5 (Build37)
Map Location 15,112,673 - 15,113,013
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203P13.T7 (MSMg01no203_p13.b1)MSMg01-203P13.TJ (MSMg01no203_p13.g1)
ACCAG388533AG388534
length758768
length of high quality
(start - end)
376 (383 - 758)341 (76 - 416)
definitionCHROMAT_FILE: MSMg01no203_p13.b1 PHD_FILE: MSMg01no203_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:20 2005CHROMAT_FILE: MSMg01no203_p13.g1 PHD_FILE: MSMg01no203_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATGGAATTACATTTTTCAAATTTTTCACTTTATTAAGAAAGAGA
GAATCCCCAATAAAAAGACTTAGACCAACAAACTGGCTACACAAACAAGA
CCCAACATTTTGCTGTTTACAGGAGACACATCTCAGAGAAAAAGATAGAC
ACTACCTCAGAATAAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATG
AAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCA
ACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTTGTTCTCATCAAAG
GTAAAATCCTCCAAGAGTAACTCTCAATTCTGAATATCTATGCGCCAAAT
ACAAGGGCAGCCACATTCCCCAAAGAAACTTTAGTAAAGCTCAAAGCACA
CATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCAC
CAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTA
ACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTA
TCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCT
CCAAAATTGACCACATAATAGGTCAGAAAACAGGCCTCAACAGATTCAAA
AATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAAGCT
GATCTTCA
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCTTCTCAGGTACAACTGGGTCTT
TGTCAAGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGC
AGCATTGAAAGTCTGAGTAGCCGGTGGGCATCCCTGCACATGTGCCTGTG
GGTAGCTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAA
TCATGGTCGCTGTTCTAGTGCTAAACCAGATTCTGGAGAAAGCTCTATTG
TTGTTAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCCCCG
GGTGGGGTAGTCTCTGGATGGTCCATCCTTTCGTCTTAGCTTTGTCTCCG
TAACTCCTTCCGTGGCCCCCCCCCTCCCTATTCTGACACTACTGCATATG
CCAGCAAGATTTTGCTGAAAGGACCTTGATATAGTTGTCTTGTGAGGCTA
TGCCAGTACCTGGCATACAGAAGTGGATGCTCTCAGTCTTTTATATTATG
GAGCACAGGGCCTCCAATGTAGAAGCTCGACAATTCACTCCAATTGCTGA
CGGGACCTGCTTTTCTTATGTTGTTACATCTATATGAACTATCCCACTCC
CTCACAACCCTGTTCCTCTAGTCTTCTTTTTTCTCCTATCACTTTCCTAT
CCTATTTTTATTTTATTAGAGCATACCCTTAAGTTCAAGATAAACTTTTA
ATATACTAGTTTTCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_p13.g1 MSMg01no203_p13.g1 CHROMAT_FILE:
MSMg01no203_p13.g1 PHD_FILE: MSMg01no203_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:20 2005
         (341 letters)



>mm_chr5_15112473_15113213
          Length = 741

 Score =  629 bits (325), Expect = 0.0
 Identities = 337/341 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacatatcgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacatatcgtgc 260

                                                                       
Query: 61  aaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcacatgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcacatgtgc 320

                                                                       
Query: 121 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 380

                                                                       
Query: 181 gtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaagacttgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaagacttgag 440

                                                                       
Query: 241 aggagcttggtggctgattatgggatggatccccgggtggggtagtctctggatggtcca 300
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 441 aggagcttggtggctgattatgggatggatcatcgggtggggtagtctctggatggtcca 500

                                                    
Query: 301 tcctttcgtcttagctttgtctccgtaactccttccgtggc 341
           ||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 501 tcctttcttcttagctttgtctccgtaactccttccatggc 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)