CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCAATAAAAGACCTTCTATGTGAATCACCATCCCTGAGGTCCA
TCTGTACTATAAAGCAATAATATTGCATGGTATTGGTACAGAGACAGACA
GGTAGATTAATAAAATAGAATTGACAACCCAAAAATAAACCCATAAACCT
ATGGTCACTTGGTCTTTGACAAAGAAACCAAAACCATGCATCAGAAAAAA
AGGAAAAAAAAAAGCAATGCTTTTTTTTTTTTAAGGAATTTATTTCATTT
ACATTTCCAATGCTATCCCAAAAGTCCCCCACACGCTCCCCCAACAACCC
ATTCCCACTTCTTGGCCCTGGCATTTCCGTGTACTGAGGCAGATAAAGTT
TGCAGACCAATGGGCCTCTCTTTTCACTGATGGTGACTAGGGAATCTTCT
GATACATATGCAGCTAGAAACACGAGCTCTGGGGGTTACTGGGTAGTTCA
TATTGTTGTTCCACCTATAGGGTTGCAGATCCTTTTAGCTCTTTGGCTAC
TTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACT
GTGAGCATCCACTTCTGTGTTTTTTAGGCCCCGACATATTTTCACAAGAG
AGAGCTATATCTGGGTTCTTTCAGCCAAATCTTGCTAGTGTGTGCAATGG
TGTCATTGTTTGGAAGCTGATTATGGGATG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCATTTCCATCAACCTTGAGA
TCACTAAGCAGTTAATAGTTTAATATTTCTGCATCCAACTATTTTTAGTG
TACAAATATATGTACATGTAGGGTTATTCTATCTTTTAAATTTTATGGTT
TCAAAAATAGTCAACTAATACCCAAAAAAAATGATATGAATAGCTCCATG
TCCATATATAAGTGATAAAACCACTTACTAAATTACTGCCTTTTCTGATT
TCAGATGTAGCTTCAGTTATTTAATGACCCTAGGGTTTTTTTTTTATGAC
TCTAGGTTTTGACAGTTTGTTTCCAGTTAATTTGCTTCCCTCAGTATTCT
TGTGGCCTTTGTTGCATGCTTCTTAAAATAAAGTTTATTTTAGTTGATAT
TTTTACATTCTTTACAGAAAAAATTAGTTCAATATACAGTTCTATCAGAA
ATCCATAAATGAGTTTTATCACATACTTGTAAGAGAAATTCAAATACAAG
GATGTCATTCATCTATAAAATACTCATCAATATATTATGTAAAAACAGTA
ATGTTCTTTTTAAGTTTTATTTCAATTCAGTACTGATAAAACTATCCTAT
ATTCAAATAATTATTTCTTGGCGATCTGATTGTACATGCTTTGATTTTTA
ATTTAAAAATACTTCTTTTATTCATAAGTTAN

Query= MSMg01no204_d03.g1 MSMg01no204_d03.g1 CHROMAT_FILE:
MSMg01no204_d03.g1 PHD_FILE: MSMg01no204_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:39 2005
         (642 letters)



>mm_chr5_55752198_55753240
          Length = 1043

 Score = 1178 bits (609), Expect = 0.0
 Identities = 635/645 (98%), Gaps = 5/645 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttcatttccatcaaccttgagatcactaagcagttaatagtttaatatttctgcatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ctttcatttccatcaaccttgagatcactaagcagttaatagtttaatatttctgcatcc 784

                                                                       
Query: 61  aactatttttagtgtacaaatatatgtacatgtagggttattctatcttttaaattttat 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 agctatttttagtgtacaaatatatgtacatgtagggttattctatcttttaaattttat 724

                                                                       
Query: 121 ggtttcaaaaatagtcaactaatacccaaaaaaaatgatatgaatagctccatgtccata 180
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 723 ggtttcaaaaatagtcaactaataccc--aaaaaatgatatgaatagctccatgtccata 666

                                                                       
Query: 181 tataagtgataaaaccacttactaaattactgccttttctgatttcagatgtagcttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tataagtgataaaaccacttactaaattactgccttttctgatttcagatgtagcttcag 606

                                                                       
Query: 241 ttatttaatgaccctaggg--ttttttttttatgactctaggttttgacagtttgtttcc 298
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttatttaatgaccctagggttttttttttttatgactctaggttttgacagtttgtttcc 546

                                                                       
Query: 299 agttaatttgcttccctcagtattcttgtggcctttgttgcatgcttcttaaaataaagt 358
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 545 agttaatttgcttccctcagtattcttgtggcctttgttgcatgtttcttaaaataaagt 486

                                                                       
Query: 359 ttattttagttgatatttttacattctttacagaaaaaattagttcaatatacagttcta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttattttagttgatatttttacattctttacagaaaaaattagttcaatatacagttcta 426

                                                                       
Query: 419 tcagaaatccataaatgagttttatcacatacttgtaagagaaattcaaatacaaggatg 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 425 tcagaaatccataaatgagttttatcacatacttgtaagagaaattcaaatacaagaatg 366

                                                                       
Query: 479 tcattcatctataaaatactcatcaatatattatgtaaaaacagtaatgttctttttaag 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tcattcatctataaaatactcatcaatatattatgtaaaaacagtaatgttctttttaag 306

                                                                       
Query: 539 ttttatttcaattcagtactgataaaactatcctatattcaaataattatttcttggcga 598
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 305 ttttatttcaattcagtactgataaaactatcctatattcaaataattatttcttggcca 246

                                                        
Query: 599 tctgattgtacatgctttgatttttaa-tttaaaaatacttcttt 642
           |||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 245 tctgattgtacatggtttgatttttaaatttaaaaatacttcttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space:   652856
Effective search space used:   652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)