Query= MSMg01no204_d05.b1 MSMg01no204_d05.b1 CHROMAT_FILE:
MSMg01no204_d05.b1 PHD_FILE: MSMg01no204_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:39 2005
(659 letters)
>mm_chr5_32598981_32600042
Length = 1062
Score = 1149 bits (594), Expect = 0.0
Identities = 641/662 (96%), Gaps = 11/662 (1%)
Strand = Plus / Plus
Query: 5 gaattccacctgcctctgcctcccaagtgctgggatcaaaggcatgcgccaccacaccca 64
|||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct: 205 gaattccacctgcctctgcctcccaagtgctgggattaaaggcgtgcaccaccacaccca 264
Query: 65 gctggctgcatcttgaaatgtgatggcattaataaacctcaacccaaggtctacagaata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctggctgcatcttgaaatgtgatggcattaataaacctcaacccaaggtctacagaata 324
Query: 125 tgagacctaagaaatgcatgggctccgtcttaacagtagaatcctagataagtcaactcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagacctaagaaatgcatgggctccgtcttaacagtagaatcctagataagtcaactcc 384
Query: 185 tcccaccaagccttgcttcatgtggtctaatctctccactgagaatcctacagagtggcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcccaccaagccttgcttcatgtggtctaatctctccactgagaatcctacagagtggcc 444
Query: 245 aactagagatccccacttagaaacaaactgtacacaatcatgtgcacacacacacaca-- 302
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 aactagagatccccacttagaaacaaactgtacacaatcgtgtgcacacacacacacaca 504
Query: 303 --gtaggggagcaggatatgtgtgcatatttttgtttcctttctacccaaatttaagaag 360
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 505 cagtaggggagcaggatatgtgtgcatatttttgtttcatttttacccaaatttaagaag 564
Query: 361 taagtatgtaccgcccc---gagctgctttttatatttttttaaaatcttattctgtgta 417
||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 taagtatgtactg----tttgagctgctttttatattttttaaaaatcttattctgtgta 620
Query: 418 cacgtgcatatatgtgcatgggcttgctagtgctgtggagcccatgaagaggttagaggc 477
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacgtgcatatatgtgcgtgggcttgctagtgctgtggagcccatgaagaggttagaggc 680
Query: 478 aagttacaggttttctctctgtctaccctgtggacctggggacaaaactcatgatcttag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagttacaggttttctctctgtctaccctgtggacctggggacaaaactcatgatcttag 740
Query: 538 acatggtagcaagagcctttacctgctgagctatcctgaggactctggactgcttttgct 597
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 acatggtagcaagagcctttacctgctgagccatcctgaggactctggactgcttttgct 800
Query: 598 ctcatcctataataaatgttgaagctttggaggcaaatctgtccatctcctttacattta 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctcatcctataataaatgttgaagctttggaggcaaatctgtccatctcctttacattta 860
Query: 658 ac 659
||
Sbjct: 861 ac 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1062
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1052
Effective search space: 682748
Effective search space used: 682748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no204_d05.g1 MSMg01no204_d05.g1 CHROMAT_FILE:
MSMg01no204_d05.g1 PHD_FILE: MSMg01no204_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:39 2005
(291 letters)
>mm_chr5_32708521_32709211
Length = 691
Score = 532 bits (275), Expect = e-155
Identities = 287/291 (98%)
Strand = Plus / Minus
Query: 1 agcgggaaggccaccacagtttgcttggggcacaaaaatagagatgttggagtcaggctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agcgggaaggccaccacagtttgcttggggcacaaaaatagagatgttggagtcaggctt 432
Query: 61 tgcccaaagccactattttgcttgtgagtggaccttacaatgaaatagtattagttcccc 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 431 tgcccaaagccactattttgcttgtgcgtggaccttacaatgaaatagtattacttcccc 372
Query: 121 aggagacatagatgcagcctcaattacagagggacagaaacttccggggctgaaagtaga 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 371 aggagacatagatgcagcctcaattacagagggacagaaacttctggggctgaaagtaga 312
Query: 181 aacacaagggatgagcaaaggacagagaagtgttttacaaacagatggagcaggtgagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aacacaagggatgagcaaaggacagagaagtgttttacaaacagatggagcaggtgagtc 252
Query: 241 cccaggccagtggatggagccaggagaaagcagccagcagggcacagctgt 291
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 251 cccaggccagtggatggagccaggagaaagcagccagcagggcacaactgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
