CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAGACCTGGGTCCAGAGAATATCAAGAGTTTCAAGAAGAGTCAG
TGAATTTCTGTCTGATCCTGTACTAAGACTTACAAGACAACCACAACTGG
TCAGCTACAGGATGTCCCAGCAGCACAGGTGACAGACTGAGCCTTTGTTA
GCAGTGGGGGCACAGCAGCATGAAGTGAGTCTGACACTGGTTAGAAAAGG
AGCTGCTGCTAAGACCTCTGCCTCAGCTACAATTGCTGTCCTTGCCTCTC
CATCCCTGGGACTCTCCATTCCTTTGTATCTCTTAGGATGTAGCAGGTCA
CAAATCCACTGAAAGAGCAGATTTCTTGCTCTTGAGAGGACAATCTGTGA
TAAGGAAGTCTGTGGACGGCCTCCTCTGCTTTCGCTTTCCCATCCATGTC
CTCCTGACCAAAAAGTGGTAAGGAAGTTGTATTAGAAAGAGGCCAGGCCA
CACCAGCGAGAGAAATTCTCTCTCCATACAGGTTTTCCTGTCATCAATTC
AAACTGACAATTTGCATTATAATTATTTTTTATTTTGAATATCCATAAAA
AATTTTACATATCAGCATATTTTTTCTAAGCTATATATCAAAATCATATC
AATGAAAACAGATGGAGAAAGTAAAGTTATTGTAAGATTAAATCAATATA
CACTAATTTTATTAAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTGTGGACCTGGGGCTATGTAT
GGGTGGTGCAATACATAGGTTATAATTGTGTGGGATTTGTGCTGGGTACC
TTATTGTCAACTTGACACAAGCTACAGTCACTTCAGACTTCGTATAGGAG
CAGACAGGAATTCACTGTCTCCTGGCTGAATGAAGTTCTTTCTTGTCCTT
CTCTGGTCCCAGGTCTAGAATTCATTGCTTCTGTTCTTGTACATGAGTGT
CTACTGAGTCAGCAAAATGCTGACAAAAACGTTTATCTCCTTGAAACATC
TGTGTCATTAGGAAGCTGGGGTTTCCTTCTACAGGAGTAGCAATATTTGA
TCCATACTTTTCCCCTTTGCAGAGAGCAGCATTATAGATTTAAAAATGAA
CAACATTGTTGAGTCTACAGTGTTGCTCTGAGAACCTGCCAAGCTTAGGA
CATCTTTCAATATGCTTTTGAGTAGATGTTGCAGCTATCCACAATTGGAT
TGCTTTTTAAATTAACTAAAGTACCAGATTCAATATGACTGATGGATTGT
CATAATGTATAACAAAATTGTAAGCATATTAGGACTAGTATCAATTAAAT
AACAAGAAATGTTTAATGATATGTTTTAACTATGTGTTTGTAAATGGAAG
CAACAGTAAATATCCTG

Query= MSMg01no204_e02.b1 MSMg01no204_e02.b1 CHROMAT_FILE:
MSMg01no204_e02.b1 PHD_FILE: MSMg01no204_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:43 2005
         (671 letters)



>mm_chr5_105073915_105074986
          Length = 1072

 Score =  928 bits (480), Expect = 0.0
 Identities = 623/672 (92%), Gaps = 9/672 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctagacctgggtccagagaatatcaagagtttcaa-gaagagtcagtgaatttc 62
           |||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 719 ggaattctagacctgggtccagaggagatcaagagtttcaaggaagagtcagtgaatttc 660

                                                                       
Query: 63  tgtctgatcctgtactaagacttacaagacaaccacaactggtcagctacaggatgt-cc 121
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 659 tgtctgatcctgtactaagacttacaagacagccacaactggtcagctacaggatgtccc 600

                                                                       
Query: 122 cagcagcacaggtgacagactgagcctttgttagcagtgggggcacagcagcatgaagtg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 599 cagcagcacaggtgacagactgagcctttgttagcagtgggggcacagcagcatgcagtg 540

                                                                       
Query: 182 agtctgacactggttagaaaaggagctgctgctaagacctctgcctcagctacaattgct 241
            | || ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 539 ggcctcacactggttaggaaaggagctgctgctaagaactcttcctcagctacaattgct 480

                                                                       
Query: 242 gtccttgcctctccatccctgggactctccattcctttgtatctcttaggatgtagcagg 301
           | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 479 gcccttgcctctccatccctgggactctccattcctttgtatctcttagcatgtagcaag 420

                                                                       
Query: 302 tcacaaatccactgaaagagcagatttcttgctcttgagaggacaatctgtgataaggaa 361
           |||||| |||  ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 419 tcacaactcc--tgaaagagcagatttcttggtcttgagaggacaatctatgataaggaa 362

                                                                       
Query: 362 gtctgtggacggcctcctctgctttcgctttcccatccatgtcc-tcctgaccaaaaagt 420
           ||||||||| || ||||||||||||| ||||||||||||||||| ||||||||| ||| |
Sbjct: 361 gtctgtggatggtctcctctgctttccctttcccatccatgtccctcctgaccagaaact 302

                                                                       
Query: 421 ggtaaggaagttgtattagaaagaggccaggccacaccagcgagagaaattctctctcca 480
           ||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||| ||
Sbjct: 301 ggtaaggaagttgtattagaaagaggccaggccacaccagaaagacaaattctctctaca 242

                                                                       
Query: 481 tacaggttttcctgtcatcaattcaaactgacaatttgcattataattattttttatttt 540
           |||||| |||| ||||||| |||||||||||||||||| ||||| |||  ||||||||||
Sbjct: 241 tacaggatttcttgtcatcgattcaaactgacaatttgtattattatt--tttttatttt 184

                                                                       
Query: 541 gaatatccataaaaaattttacatatcagcatatttt-ttctaagctatatatcaaaatc 599
           |  ||||||||||| || | ||||||||| ||||||| || |||| |||||||| |||||
Sbjct: 183 gtgtatccataaaagatataacatatcagtatattttcttataagttatatatccaaatc 124

                                                                       
Query: 600 atatcaatgaaaacagatggagaaagtaaagttattgtaagattaaatcaatatacacta 659
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 atatcaataaaaa-agatggagaaagtaaagttattgtaagattaaatcaatatacacta 65

                       
Query: 660 attttattaaaa 671
           ||||||||||||
Sbjct: 64  attttattaaaa 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1072
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1062
Effective search space:   701982
Effective search space used:   701982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)