Query= MSMg01no204_k09.b1 MSMg01no204_k09.b1 CHROMAT_FILE:
MSMg01no204_k09.b1 PHD_FILE: MSMg01no204_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:15 2005
(197 letters)
>mm_chr5_83467286_83467882
Length = 597
Score = 364 bits (188), Expect = e-105
Identities = 191/192 (99%)
Strand = Plus / Minus
Query: 6 aatatgattttcccactaaactacaaaagcaataaatgacaatgatcattatttcagtac 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aatatgattttcccactaaactacaaaagcaataaatgacaatgatcattatttcagtac 338
Query: 66 tgttgtcagaattgttttaggtacatgtttcattgaagtatttattgaatactacttctt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgttgtcagaattgttttaggtacatgtttcattgaagtatttattgaatactacttctt 278
Query: 126 tataacaattgtgttgaaattaataacaactcttggatttttgcttttaattttatgtta 185
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 277 tataacaattgtgttgaaattaataacaactcttggatttttgcttataattttatgtta 218
Query: 186 ccctaatgtgta 197
||||||||||||
Sbjct: 217 ccctaatgtgta 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space: 111321
Effective search space used: 111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no204_k09.g1 MSMg01no204_k09.g1 CHROMAT_FILE:
MSMg01no204_k09.g1 PHD_FILE: MSMg01no204_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:15 2005
(426 letters)
>mm_chr5_83439868_83440693
Length = 826
Score = 615 bits (318), Expect = e-180
Identities = 396/438 (90%), Gaps = 29/438 (6%)
Strand = Plus / Plus
Query: 1 caggacagccagggctacactgagaaaccctgtctcaaaaaatc------aaaaaaaaaa 54
||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct: 199 caggacagccagggctacactgagaaaccttgtctcgaaaaatcaaaaaaaaaaaaaaaa 258
Query: 55 aaaaaaaagaatttaatgttttaaattttttccaactcaaaattataaagtgggaatggc 114
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 259 aaaaaaaaga----aatgttttaaaaattttccaactcaaaattataaagtgggaatggc 314
Query: 115 aaaaccaaagcataagattacaggtagtttccattcttttataaataatagcaattctga 174
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 315 aaaaccaaagcataagattacaggtagtttccattcttttataaatgatagcaattctga 374
Query: 175 aataaacctaagtattgttcatgttgcctatattatatttaaaaaaa-tagaaactttat 233
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 375 aataaacctaagtattgttcatgttgcctatattatatttaaaaaaaatagaaactttat 434
Query: 234 tattttaaagcttcacgtgcatatta-atataatggatttttagtgttttccctagatcc 292
||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 435 tattttaaagcttcatgtgcatattacatataatggatttttagtgtttaccctagatcc 494
Query: 293 tgaacagagattttcaagatattgttattattattattg--gttgttgttgttgtt--tg 348
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 495 tgaacagagattttcaagatattgttattattattattgttgttgttgttgttgttgttg 554
Query: 349 -------attagtctctgtgtatttgtatgtgtgtatttcttttgnnttatncttccttg 401
|||||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct: 555 ttgttttattagtctctgtgtat------gtgtgtatttcttttggtttatacttccttg 608
Query: 402 ctntncctccnttcctct 419
|| | ||||| |||||||
Sbjct: 609 ctatacctccattcctct 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
