BAC Information

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BAC

Clone NameMSMg01-204L20
Chromosome5 (Build37)
Map Location 124,545,437 - 124,545,559
singlet/doubletsinglet
Overlap geneAbcb9
Upstream geneBC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b
Downstream geneOgfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204L20.T7 (MSMg01no204_l20.b1)MSMg01-204L20.TJ (MSMg01no204_l20.g1)
ACCAG388997AG388998
length779804
length of high quality
(start - end)
277 (45 - 321)124 (128 - 251)
definitionCHROMAT_FILE: MSMg01no204_l20.b1 PHD_FILE: MSMg01no204_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:23 2005CHROMAT_FILE: MSMg01no204_l20.g1 PHD_FILE: MSMg01no204_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTGTATACCAAGCTGGCCTCAAACTCACAGAGCTCCTCCTTCC
TGCCTCTGCCTCCTGAGTTCTGCGATTGAAGGTGTGTACTACCACTGACT
GGCCAGTTTTTGTAAGTTTTAATTATAAAAGTGAGTCAAGGGGGCTAGGA
TGTAGCTCAGTTGGTAGAGTGTTTGCCTGTTGCACCTTGGGTTTATTCCT
CAGCATCATAAAAACCAAGGTGTAGCTGGTGTGGTAGCCTACCAGACAGC
TATGTGGACCTATATGAATTTGTTTTCAGTCTAGTCAAGTTAACGAGTTC
CAGGAAACCTTTTTTTTTTCCCCCCCCCCCCCCTCAAAAATCATACTTTA
TCCAAATTTTGTTGTGACCANCCCCCAAAAAAAAAAAAAAANNNNAAATG
TGAAGAAATANACAAAAATATAAAAANAAATTAAAAAATTANAAATAAAA
TATTAAAAATTATTCTCCTTCTCTTCCTCTTTCCACCCCCACACACTTCA
TTCTCCACTCCTTATTATACTCTTATCCCCCTTTACTCCCCTATCTTCCT
CTCACCTATCCACCACAACACTATCCTTACCAACCATACTCTATCCTATA
TTCACACATCCACCTCTTACATTTTCTCCTACTTAACTCTTATCCCTTTC
ATACATCCTCATACCCCATTCATATATCATCTATTATCCTCCCCACTATG
TACCCTTTTCACTTTATTTACTGTTCTTG
NCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCAGAAATTCGGCTGTTTTTTGACCCTTCTGCGACG
CGGTCTTGTAGGTACCTTCTCGGCCACAGCGTTTGGAGGAGACCCTGGAG
GCCTGTGGCCCGGCATGGAGCTGGTGGCGACCTCTGAGGGCTGCGAGCGC
CAGGCCTAGCCTGGGCCAAGCCTTCCCAGCTATCAAGCGGGCCTGTGCGG
NCCCAGATGTCTCCTCCTCGCCTGCCTGAGTTAATTGAGATAGCTGCAAG
CGCGCCGGACACTTCCCTGCTTTTTTTTTTTCCCCTGAAGATGAGAGACC
CCCACGACCACTTTTTTTTCCCCCCCCCCCCCCGTTGTCTCTTCTTCTTT
GTTTGTTTTTTTTTTGTNCCAACCCCCCCAAAAAAAAAAAANANNAAANN
AANNNAAAAAAAATAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAGAA
AAAATATAAAAAACCCAAAAAAAATAAAATTAATTTAATAATATAAATAA
TTATATTTTTCATTATTTTATTCCCCTCCCCCCTCTTCCTCCCCTACTTC
CCCTTTCTCATCCATCTCTTACACATCATATCTTCCCTTTACCTCCTCCC
ATTTCATTCCCCTCACCATTATCCTCCCTCCCCCTTTCCCCCCCTTATTC
CCCCATCNCTCCCTACTTCCTTCTCTTTACGCTGCCCATCATTTTCTTCT
CTTCCCTCTCATCTCCTCTTTCCTTCTTTCCCCTCTTCTTCTTTCTCTTT
TTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_l20.g1 MSMg01no204_l20.g1 CHROMAT_FILE:
MSMg01no204_l20.g1 PHD_FILE: MSMg01no204_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:23 2005
         (124 letters)



>mm_chr5_124545237_124545760
          Length = 524

 Score =  238 bits (123), Expect = 9e-68
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcgtttggaggagaccctggaggcctgtggcccggcatggagctggtggcgacctctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agcgtttggaggagaccctggaggcctgtggcccggcatggagctggtggcgacctctga 264

                                                                       
Query: 61  gggctgcgagcgccaggcctagcctgggccaagccttcccagctatcaagcgggcctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gggctgcgagcgccaggcctagcctgggccaagccttcccagctatcaagcgggcctgtg 204

              
Query: 121 cgg 123
           |||
Sbjct: 203 cgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)