BAC Information

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BAC

Clone NameMSMg01-204P15
Chromosome5 (Build37)
Map Location 147,389,829 - 147,390,118
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172
Downstream geneGpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204P15.T7 (MSMg01no204_p15.b1)MSMg01-204P15.TJ (MSMg01no204_p15.g1)
ACCAG389132AG389133
length772787
length of high quality
(start - end)		298 (45 - 342)286 (79 - 364)
definitionCHROMAT_FILE: MSMg01no204_p15.b1 PHD_FILE: MSMg01no204_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:43 2005CHROMAT_FILE: MSMg01no204_p15.g1 PHD_FILE: MSMg01no204_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCACAAAGCCATCTCTCTTGATAGGGACATCAAAGACATTTTAAG
CTACCTCACTTCCATTTGACATCTATCTGTAACCTTTTCTTTTGCAGAAT
TACAAATTCTATTAACCTTAACCAGAAACATTTGATCTACTCTGCTTCCT
TTCTGTCCAAAGAGGTGAGAGTTTCACATTTTATTTTCTCAGACAGCAGT
GGGTGAAGAGAGTGCCAGCACACAGCTGAAATATCTCCTCTGTAGAAAAC
AGTTTTTAAAATGATCTAGGTTTGGGGAGAGGGGTTTGNNNNNNNNNNNN
NNNNNNTTTTTTTTTTCCCCCCCCCCCCCCCTTTTTTTTTTTTTTCTTTC
TTTTTTTTTTTTGCCCCCCCCCCCNNAAAAAATTTANNTTTTTGTTTTGT
TTGTTTTTTTTNGTTTTGCTGTTTTTTTTTTTTTTTTTTTTTTCATTTTT
TCTTTACTTATCTATTTTCTATATTCTTTTACCCTCCATATTAATTCCTT
TTAACTTTTTACCCTTTACCCCTATCCTATTTTTCATCTTTCCGCCTATT
ATTCTTTTTCCCTTTTCCACCTTTCCTCAATATCACATATTCCTATTTAT
CTTATATTACTCTATTTTTCCCTTTATACACTATATTACCCTATATTCCT
TTTTTTCCTCAATCACAATATTTTCTATTATTCTCCCCTCATCTGACCAC
TATAAATTCATTATCCATATAG

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTCCCACTGTTCCCAAGGT
TATGGAAGTAGTTCAAACACTGGTGGGAAGGTGACCCTGACCTGGCTAGC
TGCCTGCCAGGTAAAGAGCACCATGGTTGCTGTTCTTCTGAGTCTGCATC
TAGGCTGTGATGGGCTGTTTCGAGACGTGTCTGCCCTCAAGGTCTCCATG
GCAACTGACTCTTCTCCTATACTCCTATAACTAATGTCACAAACTCATTG
GTTCATCCCATGGGGCTATGCTGTGTGTGTGATGGTTTGCATCGGAAATG
TTGCCCTTTGATTTCTTGTGTCCCACCCCCCCTCCCCAGTCTACAAGATG
GATAGCACAGAGCACCCCCTTTTAAAGAAATAATTCGTTTACAGGATACT
TTTTGACTATGAAACTGAACATCAGAAAGATTAACATCAACATAGACACA
CATATACCATTCCAATAAGACTACTTACTCCGTTTGACCAAGTTCTTTCT
TCTTCTCTATCTGACACTTATTCTTCTTCTATTCCCAATACCTACACTTT
AACCAAAACCCATATCTCTCACCCTTTCCTAACTATTACACTTATAAACC
TCTATTTTCCCTATATCTTATTTTTTACCTTTCCTATCTCTTCTCTCCCT
TCACTTTTTCTTTTTCCACCTCCTCCTTCTTATCCTCCTATTATATTGTT
CCAATTCCCTATTCCTTTTCCCACTTCTTATCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_p15.b1 MSMg01no204_p15.b1 CHROMAT_FILE:
MSMg01no204_p15.b1 PHD_FILE: MSMg01no204_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:43 2005
         (298 letters)



>mm_chr5_147389625_147390322
          Length = 698

 Score =  522 bits (270), Expect = e-153
 Identities = 285/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccacaaagccatctctcttgatagggacatcaaagacattttaagctacctca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaattcaccacaaagcaatctctcttgatagggacatcaaagacattttaagctacctca 435

                                                                       
Query: 65  cttccatttgacatctatctgtaaccttttcttttgcagaattacaaattctattaacct 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cttccatttgacatttatctgtaaccttttcttttgcagaattacaaattctattaacct 375

                                                                       
Query: 125 taaccagaaacatttgatctactctgcttcctttctgtccaaagaggtgagagtttcaca 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 374 taaccagaaacatttgatctactgtgcttcctttctgtccaaagaggtgagagtttcaca 315

                                                                       
Query: 185 ttttattttctcagacagcagtgggtgaagagagtgccagcacacagctgaaatatctcc 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 314 ttttattttctcagacagcagtgggtgaggagagtgccagcacacagctgaaatatctcc 255

                                                             
Query: 245 tctgtagaaaacagtttttaaaatgatctaggtttggggagaggggtttg 294
           ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 254 tctgtagaaaacagtttttaaaatgatctaggtttggggggaggggtttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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