BAC Information

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BAC

Clone NameMSMg01-205E18
Chromosome5 (Build37)
Map Location 108,849,284 - 108,849,575
singlet/doubletsinglet
Overlap genePde6b
Upstream geneAbhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg
Downstream geneAtp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205E18.T7 (MSMg01no205_e18.b1)MSMg01-205E18.TJ (MSMg01no205_e18.g1)
ACCAG389335AG389336
length730719
length of high quality
(start - end)
317 (46 - 362)525 (75 - 599)
definitionCHROMAT_FILE: MSMg01no205_e18.b1 PHD_FILE: MSMg01no205_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:08 2005CHROMAT_FILE: MSMg01no205_e18.g1 PHD_FILE: MSMg01no205_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATTCCTCTCCAACCACATGGTGGCTCACAACCATCTGTAATGGG
ATCCAATGCTCCCTTCTGGTGCCTCTGAAGACAGATACAGTACATTCATA
TAAATAGAATAAATCTTTACAAAAAATCCCAAAGATGGCTACTCTGGAGG
TTGTGTTTGGGGATGTCCCATCCTGGTATGAGCCACTTGTCAAACCCCAG
CACTTACGGAATGACTTTGATGTCTTCTTTGCCGTGGAGGATATAATCGA
TGACTTTGTAGAAGACAATTTCCTGAGAAACAAAATATATCAATGGAGTC
TTTCTTTAAGTGAAAAGAGATCAGCACCCACCCAGACATATCCATGCACA
AAAATGCACATCCTCCCCCCCACACATGTACAGTACCTGGTAATTACATA
TGTACAGTGTATGTGCTCTCTTTCTCTCTCTCTCCCTCTCCCTCTCTCTC
TCTCTCATACTCATAGATGTGTATCACAAACCCAGATTTTAGATCTCTCT
TTCCTGTAACCCATTTAACTTCACACCAACTTGGCTCATACTCCACACAT
ACACTAAAATTCATGTGGAAGCATGTCACAATCTATGTAGGTGCTCTGTC
AACTTAAGCAGATCTAGATAATCCCCCCTCACTGGTCCAGTGCAACCTGA
TGATACGAAATAGGTGTTTGGGGCTACTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGGGTTGGTGAGCTCCAAGGGTGG
TGTTGAGCATCCAGCAGTTCTTGCACTAGCTGTTCTAGTGCTGGCAATTG
TTCTCCCTCATAGGCCATTGTTCTATCCAAACAGGTTGGTCAGTCCACCT
TAGTGAAAGGGCTGTTCGTGTTTTATTAGCAGTGTCTCCTCCATTGTTGA
AGAGCCAGCCTGTGCGGTGTCCTGTTTATGGACAACTTAGACAGCCTGTG
ACTGTTCTTGATAAGATTTTTTAACACCTTCATCAGCAACAACACTTATA
GCTTGTCCCTTAAGTTGGTAATCTGTGCCTCTCATTGTTGCAATAGATCT
CTTTCCTAAAACCCCACGGCCATATCAGCCATATATGGCATTAATTTTCC
TATTGACCTTCATGCCTTATATATTTAAATAATTTTGTACTTTTCTTTAT
CTGGGATAAACCTCCAACCCCTAGAAATTGTATATCTACCTTCTGAAGAG
ACTAATTTTGAGGCCAAGATTGTGGTTATACTATTGTTACATCTGCTCCA
GTGCCTACCANATCTTCAATCTAACATATAGTTTTAGCCTCTGACAATTT
AGAGACGTTTGTCAACTTCTAATTGTTTCTTGATCTCTCCTGAGTTTTAT
GTTTTATCTATTGAAACGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_e18.b1 MSMg01no205_e18.b1 CHROMAT_FILE:
MSMg01no205_e18.b1 PHD_FILE: MSMg01no205_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:08 2005
         (317 letters)



>mm_chr5_108848953_108849669
          Length = 717

 Score =  536 bits (277), Expect = e-157
 Identities = 289/295 (97%), Gaps = 5/295 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaattcctctc--caaccacatggtggctcacaaccatctgtaatgggatccaat 62
           ||||||||||||   |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaattcaattcc---cagcaaccacatggtggctcacaaccatctgtaatgggatccaat 567

                                                                       
Query: 63  gctcccttctggtgcctctgaagacagatacagtacattcatataaatagaataaatctt 122
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gctcccttctggtgcgtctgaagacagatacagtacattcatataaatagaataaatctt 507

                                                                       
Query: 123 tacaaaaaatcccaaagatggctactctggaggttgtgtttggggatgtcccatcctggt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tacaaaaaatcccaaagatggctactctggaggttgtgtttggggatgtcccatcctggt 447

                                                                       
Query: 183 atgagccacttgtcaaaccccagcacttacggaatgactttgatgtcttctttgccgtgg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atgagccacttgtcaaaccccagcacttacggaatgactttgatgtcttctttgccgtgg 387

                                                                  
Query: 243 aggatataatcgatgactttgtagaagacaatttcctgagaaacaaaatatatca 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aggatataatcgatgactttgtagaagacaatttcctgagaaacaaaatatatca 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)