BAC Information

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BAC

Clone NameMSMg01-205H04
Chromosome5 (Build37)
Map Location 129,270,514 - 129,270,707
singlet/doubletsinglet
Overlap geneRimbp2
Upstream geneTmem132d, Fzd10, LOC100040398, Piwil1
Downstream geneStx2, Ran, LOC100040441, Gpr133, LOC100039355, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205H04.T7 (MSMg01no205_h04.b1)MSMg01-205H04.TJ (MSMg01no205_h04.g1)
ACCAG389437AG389438
length835712
length of high quality
(start - end)
---194 (128 - 321)
definitionCHROMAT_FILE: MSMg01no205_h04.b1 PHD_FILE: MSMg01no205_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:19 2005CHROMAT_FILE: MSMg01no205_h04.g1 PHD_FILE: MSMg01no205_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGTGTGCGGGATTGGGACGGGGGCGACCNNCCCCCCNGTAGTNNNTC
GGGTCTATAATTTGCGGCCGCTAAANGAATCACNTTTTCGAAAAAGANNN
GNGGANNNNNNNTTTTACAAAAGAGAGGGGGGNNNANNGANNNNGAGNGN
NNNGANNAGGNNGGNNNGTTTTTTCCCAAAAAAGAGGAGGGGNGNANANA
NNGAGNGANGAGANNANAGGNAAANAGNANGAGGAGANGGGGGNGNGGAG
GAGGGAAAAAGGGNNNAGAAANAAAGNNAGNNGANGGGNNAGAAAAANAA
NAAGGGGGGGGGATTTTTTTTAGGGGAGAGGAAATGGGGATATTTGTGAA
AAAATGTTGTTGTGGAGGGAGGGAGAAAGAGAGTTTTTTTGTATTTTTAA
AGAAAAAGGANGGGGNAGANNGGGGGGAGGTTTTTTTGTTCCCCCCGTGT
GATGTGATTGTCTGTTATGGTTTTGTTGCATTGGAGTGTGGACCAAAAAA
AAAGAATATAATGTTGGGGGGGGTGGGGAAATGTTAATATGTAAATAGTG
AGTTGATTGTTTTTGACTTTAATTATGGTAGATAAAGTATTGTAATATGT
TTTGTATTGATAGATTTGTTTCGTTGTTCTTTTTTTTTTGTTTTCTTTGT
TTTTAATTTTGGTGTTTAAAAGTTGATTTAGTGTGGTTTGTGTGGTTAGA
TTTGTTGATTGTGGTATTGAGAATTAGTTGTTGTGGAGGTGTTGATTAGA
GGAATGTTTTTTTTTTTTTTTTTACGTTGGGGANGCAAGGGACAAAGTTT
TTAGATTGGGCAGTTGTTGCTGTTTGTATGTATTT
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAAGAAATCAGTGACAGAATAGACTGAGGAGAGGA
CAGAATATCTGAGCCTGTATTATCCGCTGGCAAGAACAAGGTAATCCAGC
AAGGACAAGGATAAACTACAGAGCTACACGACTTACTTGTAAGACACAAA
TAACAGTAGACCAAATTCTACAGGTTTATTGGCACAGCAGGAAGAGAATC
TGTTTTGAAAGCCAGAAACCATGTTCAAGACTGACAGACAGTTCTCCAGA
GTTAGGGAAAAAGGCCGTCCAGACCTTTTTGACGGACGATCGAAGAAACT
CCCCTCATGATTCTTTTCTTTACCCCACCCCCCACCGAACAAGGAAATGA
ATATTAAAAGTGGCCAGACCCCCCCTCCAGAACACAAAGGCAGGCTCCTC
GGCGCAACAACAGACTTGGCAAGTGATACTTTAAAGTGATACTGTCCTAC
AATATGCATTTCAGGCTCTGAAATACAGCTCTGCCAAACCACACTCCTAT
AATTGAGAAGTCATAGACTGACCGAATTGCGACCACCATGGTTTCCCTAT
GGATAATATCTGATCAAATCCTTTAGTCCTAAGAGAACACCTTTTCCAAT
CTACCTTTAGACTTCTAGGAATATCTAACCACTCCGCATTAATACTGATA
TATTAATCAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_h04.g1 MSMg01no205_h04.g1 CHROMAT_FILE:
MSMg01no205_h04.g1 PHD_FILE: MSMg01no205_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:19 2005
         (194 letters)



>mm_chr5_129270314_129270907
          Length = 594

 Score =  352 bits (182), Expect = e-102
 Identities = 191/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcaagaacaaggtaatccagcaaggacaaggataaactacagagctacacgacttact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcaagaacaaggtaatccagcaaggacaaggataaactacagagctacacgacttact 260

                                                                       
Query: 61  tgtaagacacaaataacagtagaccaaattctacaggtttattggcacagcaggaagaga 120
           ||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tgtaaaacacaaataatagtagaccaaattctacaggtttattggcacagcgggaagaga 320

                                                                       
Query: 121 atctgttttgaaagccagaaaccatgttcaagactgacagacagttctccagagttaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctgttttgaaagccagaaaccatgttcaagactgacagacagttctccagagttaggg 380

                         
Query: 181 aaaaaggccgtcca 194
           ||||||||||||||
Sbjct: 381 aaaaaggccgtcca 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)