Query= MSMg01no205_o19.b1 MSMg01no205_o19.b1 CHROMAT_FILE:
MSMg01no205_o19.b1 PHD_FILE: MSMg01no205_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:55 2005
(321 letters)
>mm_chr5_144075432_144076151
Length = 720
Score = 605 bits (313), Expect = e-178
Identities = 316/317 (99%), Gaps = 1/317 (0%)
Strand = Plus / Plus
Query: 5 gaattcagcttgggctacataccaaattcttttttcaaaaaaaaaaaagtcaatcaaaga 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcagcttgggctacataccaaattcttttttc-aaaaaaaaaaagtcaatcaaaga 263
Query: 65 aacaaaaaaaatgtttgctccataaaaaaaacgggactgggtgtagcacccaggcaggga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacaaaaaaaatgtttgctccataaaaaaaacgggactgggtgtagcacccaggcaggga 323
Query: 125 tgatcgatgacatcacgcacgtgtaaaagacctctacgaacatccaaactcttgttatcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgatcgatgacatcacgcacgtgtaaaagacctctacgaacatccaaactcttgttatcc 383
Query: 185 tgtctacggagactgtgggagacgctatttcgagagcagtacctggagccaggaggccgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtctacggagactgtgggagacgctatttcgagagcagtacctggagccaggaggccgc 443
Query: 245 acattccaacacggggatccgacacacggccacggccatggagaccagctttcccaacaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acattccaacacggggatccgacacacggccacggccatggagaccagctttcccaacaa 503
Query: 305 gctcattcggctgtcgt 321
|||||||||||||||||
Sbjct: 504 gctcattcggctgtcgt 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space: 221832
Effective search space used: 221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no205_o19.g1 MSMg01no205_o19.g1 CHROMAT_FILE:
MSMg01no205_o19.g1 PHD_FILE: MSMg01no205_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:55 2005
(528 letters)
>mm_chr5_144184829_144185757
Length = 929
Score = 872 bits (451), Expect = 0.0
Identities = 484/495 (97%), Gaps = 2/495 (0%)
Strand = Plus / Minus
Query: 1 taggtctacatgtggagttccaggccatctgcacagacacaaagatcctgcttcaaaaca 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 495 taggtctacatgtggagttccaggccatctgcacagacacaaagatcctgtttcaaaaca 436
Query: 61 aaagaaaaa-gggggaggggatacaggagaaaccaaatcccacactaacctttataaggt 119
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 435 aaagaaaaaggggggaggggatacaggagaaaccaaatcccacactaacctttatagggt 376
Query: 120 cagtgaaggatgattgacagctcaggctacatgggaatctcacaactgaccactaggggg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cagtgaaggatgattgacagctcaggctacatgggaatctcacaactgaccactaggggg 316
Query: 180 cggaaaaaccaaccccaaccccacgtggggttccgtatttacccattagtcatcaaacct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cggaaaaaccaaccccaaccccacgtggggttccgtatttacccattagtcatcaaacct 256
Query: 240 gaggtcccgaaaagtcagtttctacacatctattccttttcaaaaccttatttgtgggtg 299
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 255 gaggtcccgaaaagtcagtttctacacatctattccttttcaaaactttatttgtgggtg 196
Query: 300 gagatatggcttagcaattgagagtgctaccgatcttgaagaggacccgacctcaattcc 359
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 195 gagatatggcttagcaattgagagtgctaccgatcttgaagaggacctgagttcaattcc 136
Query: 360 gaacacccactcacaaccccctggaactccagctccaaaaggctttgatgcgtctggcct 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 caacacccactcacaaccccctggaactccagctccaaaaggctttgatgcgtctggcct 76
Query: 420 ctgcagagacccacacacctagacacatga-tttaagtatcttattttcattcttactgt 478
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 75 ctgcagagacccacatacctagacacatgactttaagtatcttattttcattcttactgt 16
Query: 479 cagggtgtgtttaca 493
| |||||||||||||
Sbjct: 15 cggggtgtgtttaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space: 476042
Effective search space used: 476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
