BAC Information

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BAC

Clone NameMSMg01-206C11
Chromosome5 (Build37)
Map Location 60,311,875 - 60,312,160
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206C11.T7 (MSMg01no206_c11.b1)MSMg01-206C11.TJ (MSMg01no206_c11.g1)
ACCAG389872AG389873
length738747
length of high quality
(start - end)
474 (119 - 592)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no206_c11.b1 PHD_FILE: MSMg01no206_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:14 2005CHROMAT_FILE: MSMg01no206_c11.g1 PHD_FILE: MSMg01no206_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAA
AATATACAACTGAAATGGCCAAGAAGTACTTAACAAAATGTTTAAAGTCC
TCAGTCATCATGGAACCGCAAATCAAACAACTCTGAGGTTCAATCTAATA
CCCTTCAAAATTAGCAAGATTAAAAAAAAAACAAAAAACAAAAAACAAAC
AAACAAAAAACAAAAACAAAAAAAAACAAAGAGAAGATAGCCCATGCTCT
TGAGGATGTGAAGCAAGGGTAACACTCTTCTTCATTGCTGGTAGGAGTGC
AAACTTATACAGCTAACTTGGAAATCAATTTGGTATATTCTCAGAAAACT
CGAAATATTTCTATCTCAAGGCACTGCTATACCACTAGTAGGCATATACC
AAAAATATGCCCCACAATCTCACAAAGATACTTGCTCAAATGTGTTCAAA
GCAGCTTATTCATAATAATCAGAAACTGAAAACTACCTGAATGTCCCTCA
ACTAAAAAGTGGATAAAGAAAATCTAAGCAATTGAATGGCATTGACCTAT
TAAAAACAAAGACACCATGTATTTTTCAGATAAATGGGTAGACATGCATG
GTATATACTCTCTTAAATATTAGCCATAAATTAGAGTACCACGTTATATT
CCACAGACTCATAGAAACTAAAAAAGAAGCATATGCAATGGAGCTTGAAT
CTCACTTAGAAAGAGGAATAAAGTTTTGACTATGGGAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAGGAAAAAAGTATGTGGAA
AAGACAAAGCACAGAAATGGAGTACCAGTAGTCTTCTGTAAATTTATTAC
AGAAGGACACACACAGAATGACCTGGTATACTTTGACAAAGAATGTTTTC
TTTCATAGCACACTCAAACTAAGCACTTTAATGAATACATGGTGATACTA
ATTTTGTCCAGTATGTTAAAATATCCTTAACTGCACTGATCTCATAATTA
TTGCTTTTCCCATTGTAATTAATAACTAGTTTTCAGACTATTACCTTGTG
ACTATATACATATATTCTATAACCCCCCCCCTGTTGTTTAAATCTTTAAA
CATTCTGACCTGAATCCCCGCCCTCTGATTTGATGTAAAAATTTAATTAA
CTTCATTATTTATTCTATATTTTAATGGAAATTTCATTAAAAATAATTCT
CTAGCAATCAATTAATTATTAATTTAGCAACTATTTTACATGCATAATTT
CATTTTTAATAATTCATAGATTGTTTTTTATATAAACATCCATTTTTATA
ACGACATAAATTGATGCTCAACTGGTTTATCTGTATGGATGCCTTGGCAT
TGAAAGTGATTTCAACGATTACTGTTAAATACTCATTTTCTCCACATCAA
GACAGTTATGTCTTATATTATTCACCCTATACCCCACTTTTTATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_c11.g1 MSMg01no206_c11.g1 CHROMAT_FILE:
MSMg01no206_c11.g1 PHD_FILE: MSMg01no206_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:14 2005
         (290 letters)



>mm_chr5_60311675_60312363
          Length = 689

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%), Gaps = 1/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcaggaaaaaagtatgtggaaaagacaaagcacagaaatggagtaccagtagtcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 ttttcaggaaaaaagtatgtggaaaagacaaagcacagaaatggagtag-agtagtcttc 259

                                                                       
Query: 61  tgtaaatttattacagaaggacacacacagaatgacctggtatactttgacaaagaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgtaaatttattacagaaggacacacacagaatgacctggtatactttgacaaagaatgt 319

                                                                       
Query: 121 tttctttcatagcacactcaaactaagcactttaatgaatacatggtgatactaattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttctttcatagcacactcaaactaagcactttaatgaatacatggtgatactaattttg 379

                                                                       
Query: 181 tccagtatgttaaaatatccttaactgcactgatctcataattattgcttttcccattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tccagtatgttaaaatatccttaactgcactgatctcataattattgcttttcccattgt 439

                                                          
Query: 241 aattaataactagttttcagactattaccttgtgactatatacatat 287
           |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 aattaataactaattttcagactattaccttgtgactatatacatat 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space:   191080
Effective search space used:   191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)