CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATTAGAAAAGAGAATGGGAATCTGAAGTTCAAACAAAAGACTGT
ATTGTTATGAAGTTTAAAGGTGAGTTCATACAAATATCAAAAACTAATTA
AGGAGAATAGGTGATATTTAACTACTTTGAAACTTCAAAACGGGAAATTG
ATTTTTGTCTCATTGGATTAAATTACATTTTCATATTGATTGACACAGGG
AGCTTCTGTTACTTCTCCTCCGGAGAAGGTAAATACAGCAGCTGCTACTT
ATTCATGAAAGCCTGTCTCTCACAATTTCAGGGAATGTTATTTTAGCATT
TTATTATTGAGTAAATATTTTGACAGGCGATGATATTTTGGAAGATAAAC
AGAATAAAATCATCGAACCACCCTTACTCTGTAATTTAGACCTAGGAAAG
AAGCCATAGATGTAGTAGGATATATTCCCAAGTCAATTTTCTCTGGGTAT
GGTGCAGATCATGATCAATGGAATCAATGAAGCTTAATTAAAAGTTTGAC
CATTAATATTTTTGACAGCCTCCAAATGAAAGTTTTGAGCAAAGTGCTGC
ACTTTTTGAGTAATCAGTTTTGTTCATGAACTTCTTTGATATTATAGAAT
GACAAAGCATAAGGAGACATGAGTCTAATAGAGTACTAAGTTATGAGAAA
GTAAAAGCATGTTTCTTAGGCCAATGAAGTATTAATAN

CCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGTTAGCTAGAATTTTACTGAGGATT
TTTACATCGATATTCCTAATAGAACTTGGTCTTAAGTTCTCTGTCTTTGT
TGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATG
AAATGGGTAGAGTACCTTCTGCTTCTATTTTGTGGAATAGTTTGTGAAGA
ACTGGAATTATATCTTCTTCGAAGGTCTGATAGAACTCTGCACTTAACCC
ATCTGGTCATGGGCTTTTTTTGGTTGGGAGACTATTAAAGACTGCTTATA
TTTCTTTAGGGTATATATGAACTCTTTAGATCATTAACCTGATCCTGATT
TAACTTTGGTACCTGGCACCCGCCTAGAAACTTATCCATTTTATCCAGGT
TCTCCAGTTTTGTTGATATAGCCTTTTGTAGAAGGATCTGATGGCGTTTT
GGATTTCTTCAGGATCAGTTGTTATGTCCCCCTTTTCATTTCTGACTTTG
TTAACTACGATGCTGTCCCTATTTTTTCTATTATTTTTGGCCGATGGCCC
ATCTATTTTTTTTTTCTCCCTCACTTAATCATTTTTCTTCTTGGGTCGCT
TTTTTCAACCTTTTCTTTTTGTTTATCTTCTGTTCCCCCTTCTTTCCCCG
ATTTTCTTTTTTTCTTTTTCTCCGTATTTCCTCTATTTTTCTTTTT

Query= MSMg01no206_g23.b1 MSMg01no206_g23.b1 CHROMAT_FILE:
MSMg01no206_g23.b1 PHD_FILE: MSMg01no206_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:37 2005
         (693 letters)



>mm_chr5_83829732_83830825
          Length = 1094

 Score = 1278 bits (661), Expect = 0.0
 Identities = 682/689 (98%), Gaps = 1/689 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattagaaaagagaatgggaatctgaagttcaaacaaaagactgtattgttatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattagaaaagagaatgggaatctgaagttcaaacaaaagactgtattgttatg 264

                                                                       
Query: 65  aagtttaaaggtgagttcatacaaatatcaaaaactaattaaggagaataggtgatattt 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtttaaaggtgagtttatacaaatatcaaaaactaattaaggagaataggtgatattt 324

                                                                       
Query: 125 aactactttgaaacttcaaaacgggaaa-ttgatttttgtctcattggattaaattacat 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 aactactttgaaacttcaaaacgggaaaattgatttttgtctcattggattaaattacat 384

                                                                       
Query: 184 tttcatattgattgacacagggagcttctgttacttctcctccggagaaggtaaatacag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcatattgattgacacagggagcttctgttacttctcctccggagaaggtaaatacag 444

                                                                       
Query: 244 cagctgctacttattcatgaaagcctgtctctcacaatttcagggaatgttattttagca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagctgctacttattcatgaaagcctgtctctcacaatttcagggaatgttattttagca 504

                                                                       
Query: 304 ttttattattgagtaaatattttgacaggcgatgatattttggaagataaacagaataaa 363
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 505 ttttattattgagtaaatattttgacaggtgatgatattttggaagataaacagaataaa 564

                                                                       
Query: 364 atcatcgaaccacccttactctgtaatttagacctaggaaagaagccatagatgtagtag 423
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcatcgaaccacttttactctgtaatttagacctaggaaagaagccatagatgtagtag 624

                                                                       
Query: 424 gatatattcccaagtcaattttctctgggtatggtgcagatcatgatcaatggaatcaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatatattcccaagtcaattttctctgggtatggtgcagatcatgatcaatggaatcaat 684

                                                                       
Query: 484 gaagcttaattaaaagtttgaccattaatatttttgacagcctccaaatgaaagttttga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaagcttaattaaaagtttgaccattaatatttttgacagcctccaaatgaaagttttga 744

                                                                       
Query: 544 gcaaagtgctgcactttttgagtaatcagttttgttcatgaacttctttgatattataga 603
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcaaagtgttgcactttttgagtaatcagttttgttcatgaacttctttgatattataga 804

                                                                       
Query: 604 atgacaaagcataaggagacatgagtctaatagagtactaagttatgagaaagtaaaagc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atgacaaagcataaggagacatgagtctaatagagtactaagttatgagaaagtaaaagc 864

                                        
Query: 664 atgtttcttaggccaatgaagtattaata 692
           ||||||||||||| |||||||||||||||
Sbjct: 865 atgtttcttaggcaaatgaagtattaata 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1094
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1084
Effective search space:   740372
Effective search space used:   740372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)