Query= MSMg01no206_j21.b1 MSMg01no206_j21.b1 CHROMAT_FILE:
MSMg01no206_j21.b1 PHD_FILE: MSMg01no206_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:51 2005
(373 letters)
>mm_chr5_71360620_71361393
Length = 774
Score = 667 bits (345), Expect = 0.0
Identities = 363/369 (98%), Gaps = 1/369 (0%)
Strand = Plus / Plus
Query: 4 ggaattctaccttcattcattgattttagatctgaaaagagagatgatctgcactaatgg 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaccttcagtaattgattttagatctgaaaagagagatgatctgcactaatgg 263
Query: 64 tttaggttgctctaccatgccaatgtgtatttaaaaataaaacattaaaaattggagact 123
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttaggttgctctaagatgccaatgtgtatttaaaaataaaacattaaaaattggagact 323
Query: 124 ctaaatgaactataaaaaaaaaaa-gaaaagaaattctgtttgttggaatgtgatatttt 182
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 ctaaatgaactataaaaaaaaaaaagaaaagaaattctgtttgttggaatgtgatatttt 383
Query: 183 gtcatgtccctgactgaggtatcaattgctggtaagtacctatattaaaacagagaaaag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtcatgtccctgactgaggtatcaattgctggtaagtacctatattaaaacagagaaaag 443
Query: 243 aaaaagaagatgaggttggattttctttgttttgctgctgctgcttctaatgttgttgtt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaaagaagatgaggttggattttctttgttttgctgctgctgcttctaatgttgttgtt 503
Query: 303 gatttctgtgtcttttggggggaggcagggtgtagaatagccatgcgtatcaattattaa 362
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 504 gatttctgtgtcttttggggggaggcagggtgtagaatagccatgcgcatcaattattaa 563
Query: 363 attattacc 371
|||||||||
Sbjct: 564 attattacc 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 774
Length adjustment: 9
Effective length of query: 364
Effective length of database: 765
Effective search space: 278460
Effective search space used: 278460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_j21.g1 MSMg01no206_j21.g1 CHROMAT_FILE:
MSMg01no206_j21.g1 PHD_FILE: MSMg01no206_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:51 2005
(640 letters)
>mm_chr5_71468559_71469598
Length = 1040
Score = 1093 bits (565), Expect = 0.0
Identities = 615/643 (95%), Gaps = 20/643 (3%)
Strand = Plus / Minus
Query: 1 agtttcatataaacaagaaacttagtagtaggtggctcctgtctttcacctattattaaa 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 997 agtttcatataaacaagaaacttagtagtaggtggctcctgtcattcacctattattaaa 938
Query: 61 aggtcatataaagagctcaaacttaactaggagtggttgtgtattaataatccctgcact 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 937 aggtcatataaagagctcaaacttaactaggagtggttgtgtattaataatccccgcact 878
Query: 121 taggaacttcagggaagatggtcagggcagcagactaaataccaagccagttagaactgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 taggaacttcagggaagatggtcagggcagcagactaaataccaagccagttagaactgg 818
Query: 181 gagtatataacatgatcctgtttctaaaaggaaaatcattgtctttaatatttaatacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 817 gagtatataacatgatcctgtttctaaaaggaaaatcattgtctttaatatttaatatta 758
Query: 241 ttcttatgtacactacttatggtttttcttaaattatctatctatctatctatctatcta 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ttcttatgtgtactacttatggtttttcttaaattatctatctatctatctatctatcta 698
Query: 301 tctatctatctatctatccatctatctatctcctgagtagc----tcccctttttactgc 356
||||||| |||||||||||||||||||||| | ||||||||||
Sbjct: 697 tctatct------------atctatctatctcctgagtagcttttt----tttttactgc 654
Query: 357 atgtttaaagacaattgcaaagaaggaaaagaccttaccaacaatggaaaatgataatcc 416
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 653 atttttaaagacaattgcaaagaaggaaaagaccttaccaacattggaaaatgataatcc 594
Query: 417 agtataggagaaagaataaaatcatggttacatttaataattacatataaatatataaat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agtataggagaaagaataaaatcatggttacatttaataattacatataaatatataaat 534
Query: 477 acaacctattgagtctatgtagtatttctaatacatagtatacatatattattaaagttg 536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 533 acaacctattgagtctatgtagtatttctaatacgtagtatacatatattattaaagttg 474
Query: 537 actactggtattgggcaattaattagtgaacttatctctggagaagactgagtctccctc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 actactggtattgggcaattaattagtgaacttatctctggagaagactgagtctccctc 414
Query: 597 tttcagttgtcattagttgcctgtagctcttcataatctcagg 639
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tttcagttgtcattagttgcctgtagctcttcataatctcagg 371
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
