BAC Information

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BAC

Clone NameMSMg01-207C22
Chromosome5 (Build37)
Map Location 12,441,305 - 12,442,136
singlet/doubletsinglet
Overlap geneSema3d
Upstream geneLOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059
Downstream geneLOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207C22.T7 (MSMg01no207_c22.b1)MSMg01-207C22.TJ (MSMg01no207_c22.g1)
ACCAG390506AG390507
length1,2051,695
length of high quality
(start - end)		838 (40 - 877)---
definitionCHROMAT_FILE: MSMg01no207_c22.b1 PHD_FILE: MSMg01no207_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:47 2005CHROMAT_FILE: MSMg01no207_c22.g1 PHD_FILE: MSMg01no207_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATTTNNNNNNAATCATTGGGCGCTAAGACTCCTATGGGAGAGGATCC
GCGGAATTCGCTTGATACCATTATAATCACAATGACAGTGATCCGATAGT
CTTAATTATTTTAAAGTAGTAAAGTATTATGTGTATTAGAAAAGCAGAGG
TACTACTTTTCCTTTGTGGTTATTATAGTTTTTTATTTCCCGACTTGAGT
CAAAATATGTAAAGGTTATTTTTGTACACACACACACACACACACACACA
CACACTTGAGAGTGAATCCTAAATCTCGGTGTTCTTGGTATTAAGTCTTC
ATGTCTGAAAAATTACTGTATATGTTAATTATTGTTCCGTACAATATTAA
CAATTCATCAGCTTGCCTTATCAATTTTAACAAGATTTTATAAATAAGCC
ACATCAATTAAATTCACACAAAATTTTACATATCTTGTTTCTCAAATGAA
AATTTTAATGAGTTACCATCCATATAATAAGCTTTGTGCTTTTTATGTAA
CTTGGGGAAATGGCATGGGGCTTCTTGAGTGTTAGATTGTGCTTTTGAAT
CTCTGATTTAGTGGAACAGTGTGTAAAATCTCATAATCAGAACACTCCCT
ATTGGCTCCACATCTGAAGATACCCAAGGGTGCTGTTTGTCTCAGTGAAC
ATCTGGAGTAGATTATATGCAGCTAATTGGCTCCAGGTCAAGCTTATTAC
AGACAGTAGCATGCAGTACAACCTATGCAATTCACTAAATCCACCCACTT
TGGGTAACTCACACCTACTTCTATTTATTCATAATTCCTCCCAGATGTAG
GACTTATATACACATGTATTATGTATATGTGGATACTCACGTACATGTAC
ACACACAAATATTGTCTATATCAATGTATTAGTAGAGAGGTTATGGAAAA
ACATTTACTTAATTTATTAAAAAACAAATGGTTGATTTAAAGAATTGTTT
TGAAAGAAAAGGGAACAGGATTATAGTGTGTAGAAAAATCATTTAGTAGT
ATAAAAATATTCTTTTTTAAATTCTAAAATTTCCAACACTTTGGATGGAT
TTTTATTTCCCCCCCTTGGAAGGTTCACCCCGCGGGAGCCCTTTCTCAAA
ATGTCTCCCAATTAAACATTGCACCGCCTTTTATTTTTTTCCTTTAAAAC
ATTTTTGAAGTGGGGAGGTTTTGTAAAAAACTAATTGCTCCCGGGTTCCT
TAAAC

TTTCTTTTAAAAGAGGGCCNGGGNGNNNNGNNNNNCNNGGGGANAGAGAA
NAAATTCCTCTTTAAAAGGGGGTGCNNNAGCCCCCNNGANNATACCAGGA
NGGAGAGAGAGAAAAGAGAAGAGCGAAGGGAAAGAAGGAAGAGGAGAAGG
GAATTTCTCTCTAAAGGAGGTTGTTTTAGGATAAAATGGAGGTAAAGGAT
ATATGATGAAAGATATGAATGTTGTGTTGTATGATTTGTTATGATTTTGT
ATAATAGTAGTTTAGAGTATAAGATTGTAGGATAAATGATAAGTTAAATT
GTTTTGTTAGATAATATATAGTGTTAAGTGTGATATGGAAGGTGTTAATG
ATTATAGTGTATAATGTGTAGTAGAAATTTATTGAATTTGAGTGATAATT
ATGAGTATTTATATAGATAATGTAGTGGATAAGGATAATATTGTTTTTTT
TTTTATGTAATAGTATTATTGGTGGTGGTCGTGTTATTATGAAGAGTGAT
AAAGTGATTATTTTTTTTTTTGTTTTCCCCCCGCCAGAATATATTATGTT
GTTTTTGTATAAAAAAAAAAAAAGAGAGGGGGGGTTTTGTTGTGTTTGTT
ATATAATTATAGTTATAAATTTAGAAAATATTTATTTAAATATTTTATGA
AATTTCAATTGAGAGTAGAAGAATAGATATTTTATAAAATATTAATATAT
AATAAATAATTGTTAAAATGTGGTGAGAATATCATATGGTTAGAATTAGT
TTNACTATAAGTATAATATATGTGAGAATGGTTCTTATTATGAATATGAT
TATTTGTTGTAATGTGTTAGTTATATAGTATTATAATATGATTAATGAAT
TGATAAAAATGTATTTTTGTATGTATATTGAGATAATATAATTAAGTATA
ATAGAATATATGTAGATTATTAGGATACAGAAGAGAGAAATATTAAATTA
AAGAGTGAGAATTATATGTANTAGAGTGGTTGTTAATGATAATTTAATTG
AGTATATGTCTGTAGATAAATAAAATTGATTATATGTTAATAAATAGTGA
AAAGATATGTAAATATATATTACAATAAAAATAAGATATAGAATAATGTA
TAATATTGAATATAAGTATGTAAAATATTGTATGAGTGAGGAGAATAGTA
TATTTTAGAATGTTAGTAATGAGATATGATTATTGAAGTAANATTTGAAT
AAATATTATTTTAGTATTAGAAGTGAGATAGGATGATTATATAATGAGCT
CTATANATTGATATAAGAGTGATGATGGATGTAAGAGGATGTTAATGTAT
ATGTTAGTTTGTATATTGAATAAATGTAGTATAGAGATAGTGAGAGAATT
GAATATTATATNTTATCTATATGATAATNCNNNCNNNNNTNNCNTTGTGA
TATCTTNATTTTTTAAAANNNNNNNNNNNNNNNNNNTNNANGNNNANNNG
GNNATTNATGNNTGTNTTGTAATAGATATATTGTTAGATATATGTATATT
TGTATAATANTAAGTTATTAGGTTGGTGTAATATAATATTTGAATATTAT
GAGATAATTGATGTATGGAATGAGTTAATTTATGTAAAGATATTAANGAT
ATGTGAATGAGTTATATATTGGTAGTATGTGATATATGTTGTATATATGA
GTTATATAAGTTGTTTAGTAATAATATATAAGTAATTAGAGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_c22.b1 MSMg01no207_c22.b1 CHROMAT_FILE:
MSMg01no207_c22.b1 PHD_FILE: MSMg01no207_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:47 2005
         (838 letters)



>mm_chr5_12441099_12442336
          Length = 1238

 Score = 1435 bits (742), Expect = 0.0
 Identities = 807/836 (96%), Gaps = 16/836 (1%)
 Strand = Plus / Plus

                                                                        
Query: 15   gaattc-gcttgataccattataatcacaatgacagtgatccgatagtcttaattatttt 73
            |||||| ||||||| |||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct: 207  gaattcagcttgatgccattatagtcacaatgtcagtgatcagatagtcttaattatttt 266

                                                                        
Query: 74   aaagtagtaaagtattatgtgtattagaaaagcagaggtactacttttcctttgtggtta 133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267  aaagtagtaaagtattatgtgtattagaaaagcagaggtactacttttcctttgtggtta 326

                                                                        
Query: 134  ttatagttttttatttcccgacttgagtcaaaatatgtaaaggttatttttgtacacaca 193
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 327  ttatagttttttatttcctgacttgagtcaaaatatgtaaaggttatttttgtatacaca 386

                                                                        
Query: 194  cacacacacacacacacacacacttgagagtgaatcctaaatctcggtgttcttggtatt 253
            |||| |   ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 387  caca-a---acacacacacacacttgagagtgaatcctaaatcttggtgttcttggtatt 442

                                                                        
Query: 254  aagtcttcatgtctgaaaaa-ttactgtatatgttaattattgttccgta---------- 302
            |||| ||||||||||||||| |||||||||||||||||||||||||||||          
Sbjct: 443  aagttttcatgtctgaaaaaattactgtatatgttaattattgttccgtatctaaaaaat 502

                                                                        
Query: 303  caatattaacaattcatcagcttgccttatcaattttaacaagattttataaataagcca 362
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 503  caatattaacaattcatcagcttgccttatcaattttaacaagattttgtaaataagcca 562

                                                                        
Query: 363  catcaattaaattcacacaaaattttacatatcttgtttctcaaatgaaaattttaatga 422
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563  catcaattaaattcacataaaattttacatatcttgtttctcaaatgaaaattttaatga 622

                                                                        
Query: 423  gttaccatccatataataagctttgtgctttttatgtaacttggggaaatggcatggggc 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623  gttaccatccatataataagctttgtgctttttatgtaacttggggaaatggcatggggc 682

                                                                        
Query: 483  ttcttgagtgttagattgtgcttttgaatctctgatttagtggaacagtgtgtaaaatct 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683  ttcttgagtgttagattgtgcttttgaatctctgatttagtggaacagtgtgtaaaatct 742

                                                                        
Query: 543  cataatcagaacactccctattggctccacatctgaagatacccaagggtgctgtttgtc 602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743  cataatcagaacactccctattggctccacatctgaagatacccaagggtgctgtttgtc 802

                                                                        
Query: 603  tcagtgaacatctggagtagattatatgcagctaattggctccaggtcaagcttattaca 662
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 803  tcagtgaacatctggagtagattatatgcagctaattggctccaggtcaagcttgttaca 862

                                                                        
Query: 663  gacagtagcatgcagtacaacctatgcaattcactaaatccacccactttgggtaactca 722
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863  gacagtagcatgcagtacaacctatgcaattcactaaatccacccactttgggtaactca 922

                                                                        
Query: 723  cacctacttctatttattcataattcctcccagatgtaggacttatatacacatgtatta 782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923  cacctacttctatttattcataattcctcccagatgtaggacttatatacacatgtatta 982

                                                                    
Query: 783  tgtatatgtggatactcacgtacatgtacacacacaaatattgtctatatcaatgt 838
            |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 983  tgtatatgtggacactcacgtacatgtacacacaaaaatattgtctatatcaatgt 1038


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 838
Length of database: 1238
Length adjustment: 10
Effective length of query: 828
Effective length of database: 1228
Effective search space:  1016784
Effective search space used:  1016784
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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