BAC Information

Click to search

BAC

Clone NameMSMg01-207D11
Chromosome5 (Build37)
Map Location 97,973,417 - 97,973,803
singlet/doubletsinglet
Overlap genenone
Upstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207D11.T7 (MSMg01no207_d11.b1)MSMg01-207D11.TJ (MSMg01no207_d11.g1)
ACCAG390529AG390530
length1,2151,215
length of high quality
(start - end)
---384 (72 - 455)
definitionCHROMAT_FILE: MSMg01no207_d11.b1 PHD_FILE: MSMg01no207_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:52 2005CHROMAT_FILE: MSMg01no207_d11.g1 PHD_FILE: MSMg01no207_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGGAATTNNNNNNCAACATTGGGCGCTATAGACTACTATAGGGAGAGG
ATCCGCGGAGAATAANCAGAGAAAACGACCTTTAAAAACCCGANAGGAGA
NAAAAAGGANACGGANCGGGCCCTTTAAAAAACTGAGAAAGCAGTTTGGT
AACACAACACAGACGAACAAGATGGAAAACAGGGCAAATCAAGCCCCTAG
AGGGAGCCCGGCAATGTGATAAAATCAGACGGAAGAAAAGAAATCCAGGG
AGAGCAAGAAAGAAAAATGAACAGTGACGAAGAGGGAAAAAGATAACGAA
CAGATAAGAAAATAAAAGAGAAAAGTCATAAGAGAGCCGGAGAGAAAAGT
AGAGGGAGGGAACTGAAGGAAAAGAACAGAAGGCAATAGCTAACGAGGTA
CACAAAGGGAATATTTTTTTCGAGCACGGATACCAAAGCTGAAGGAGGTA
ACATAAAACAGAGAAGTTTTTGTTGCCCGCCGACTCGGTCCGGAGTTGCC
GGAAAAAAAGGGGGGGGGGCGCTATGTTTXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXGAAACTCAATGGGCGATTTCTTTAAAGTCCCACC
GAAAAGGGGAAAAGGAACAAGGGGGAAAACCCCAAGGAAGGGGAGGGGGC
TCCCAAAATGGGAAAATTATAAAAGGGAGTCCAAGAACTGAAAATAGAAA
AAATGGGACGTAGTA
NNNGGTTGAGGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGTACAAGTGTCCACAAGAAGTTTCCAT
GCACATAAAATCCTAGAGTGGGCAAATGCCCTGCATTGGTAAACTGTGTA
TCAGTAGCTTCCTGAAAAATAGTGAACCGAGTGACCGGACTTGAAAGAGA
CAAGGCAGACTTGGAGCAGTGAAGTGTGTTGCATGAGTTTATCCTCATTG
AGTTACTATTCCATATGGAAAAACAAAGTCAAAACATAACATGCAGTGTA
TTTTAGATTTGAAAATTCATTGTAGGTTAGCGCCTCCTGAAGTTGTTTAA
AAAGACAACAACCCTGTTGTCTTAATGATTGCATCAAACTGATGTAACAT
AGCATTCTTACTTGTCAAAATATTTATTCCTTAAATGGCAAAAAATTGGA
CATGTTTTTTTTTTCCCCCCCCCATTGGAAGATGCCTGCTCTAAAAAAAG
AAGCCACACAGGTGAGATGCATGTCGGAGGAGGAGAAGGTAGCTGTGTGG
AGAGAAGGAAGCATGGTCCAGGGGAAGTGAGACACATAGCAGAGGCACAG
AGGGCTGGCCTCCCTTCTAGCCACCTTTGGCTGCTGCCTCCTGAACCACA
TCTCTACCACCAGAATGGCAAATATTGCTACTTTTGGTGAGTTATCCTTT
CTTTCCAATATGCAAAGGAATGTAATGTTAGTACAGAAATTTCTAAATGT
GCAGGTAATGACTTCCTTGCTTTCAAACCTGAAGTATGATTTGGTATAAC
AGTGTAGTCAGTGTGCCATCTTGCAATGATTCCATGATGGCTCAGCTGTC
ATGTTGGGTGCCAGCTAATATACGTGTGGTATATGTGTGTGTGTACACCT
ATTCATATACCCCTTATCCGATATCTATATGTGGATTTTGCGTGCATGTT
GATTTATTGGTGTAATGTCTATCTGAATTATTTTAATCGGTATATTTTAA
ATACACCTCTTGTTTGCTTAAATAACCTATTTTTTTTAAAAGTCTTTTCT
TTTTTTTTTGAAAAATTTTAAGGTCCGTGTTCTCCTATTCTTATTTTTTT
TTTGATATCCTTTATTTTTCCTTTTTCTCTAAATGAATTTCTACTATATG
TTTTTTTTATATGGCTCTTTATTTACTTATAATAATGTAGTCCTTTTCTT
TATCATTGTTTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_d11.g1 MSMg01no207_d11.g1 CHROMAT_FILE:
MSMg01no207_d11.g1 PHD_FILE: MSMg01no207_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:52 2005
         (384 letters)



>mm_chr5_97973217_97974004
          Length = 788

 Score =  671 bits (347), Expect = 0.0
 Identities = 376/387 (97%), Gaps = 4/387 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtacaagtgtccacaagaagtttccatgcacataaaatcctagagtgggcaaatgccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 587 aggtacaagtgtccacaagaagtttccatgcacataaaatcctagagtgggcaaatgttc 528

                                                                       
Query: 61  tgcattggtaaactgtgtatcagtagcttcctgaaaaatagtgaaccgagtgaccggact 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 527 tgcattggtaaactgtgtatcagtagcttcctgaaaaatagtgaaccgagtgaggggact 468

                                                                       
Query: 121 tgaaagagacaaggcagacttggagcagtgaagtgtgttgcatgagtttatcctcattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgaaagagacaaggcagacttggagcagtgaagtgtgttgcatgagtttatcctcattga 408

                                                                       
Query: 181 gttactattccatatggaaaaacaaagtcaaaacataacatgcagtgtattttagatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gttactattccatatggaaaaacaaagtcaaaacataacatgcagtgtattttagatttg 348

                                                                       
Query: 241 aaaattcattgtaggttagcgcctcctgaagttgtttaaaaagacaacaaccctgttgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aaaattcattgtaggttagcgcctcctgaagttgtttaaaaagacaacaaccctgttgtc 288

                                                                       
Query: 301 ttaatgattgcatcaaactgatgtaacatagcattcttacttgtcaaaatatt---tatt 357
           |||| ||||||||||||||||||||||||||||  ||||||||||||||||||   ||||
Sbjct: 287 ttaacgattgcatcaaactgatgtaacatagcagccttacttgtcaaaatattatttatt 228

                                      
Query: 358 ccttaaatggcaaaaaa-ttggacatg 383
           ||||||||||||||||| |||||||||
Sbjct: 227 ccttaaatggcaaaaaaattggacatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 788
Length adjustment: 9
Effective length of query: 375
Effective length of database: 779
Effective search space:   292125
Effective search space used:   292125
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)