BAC Information

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BAC

Clone NameMSMg01-207H17
Chromosome5 (Build37)
Map Location 118,761,017 - 118,761,427
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik
Downstream geneLOC665162, Thrap2, LOC100039488, EG665194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207H17.T7 (MSMg01no207_h17.b1)MSMg01-207H17.TJ (MSMg01no207_h17.g1)
ACCAG390696AG390697
length1,2121,521
length of high quality
(start - end)
429 (40 - 468)---
definitionCHROMAT_FILE: MSMg01no207_h17.b1 PHD_FILE: MSMg01no207_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:28 2005CHROMAT_FILE: MSMg01no207_h17.g1 PHD_FILE: MSMg01no207_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTTTTTNNNNNNGGCACTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCCTTTCAGTGGTAAGTAGCCTTGCTCATGCAAGTAGCCCT
AAACTCAACTAAGCGGGCTACTTTCATGTACATACACCCCACAGGATAAT
AAATAGGAGGGGACGTAGGAGTTCTGAGGAGGTAGGAGACAGCCCTGAAA
GAGGACAATGGAGTGAAGTTATCAAACTATGTCACACAAGGGTATGAAAT
TGTCAAACAATAATTAAAAAAAAAAAGTTAAGAGTCACATGCAGTACTGG
GGGATGTCTGAGAGACACCCAGCAAGGAAAGGCTCCTGGCTTATCCTCTC
TCAGACTCAGGTCCCTGGAATCTCCGAGCGCCTGCAGCCAGATGATGCGG
GTTTCCTCAAGGCCCTCCGTCCTCCCTGTGTGATATTCACACCTCCTGTG
TTTACAGAAGTGCGTGTTTTTTTCTCCCCCCCACCCAGGTCTCCAGTGGC
GGGTGAAAGGAAGGAAGGAAGCAAGAGGGACTGAGTGGAGCAGGTGGTAC
CTTGTGGATGGCTCAGTCTGTCAGAGGTGGGACCACAGTGCACACTGTGT
GTGTGTGTGTGTGTGTGTGTGATGCTTCCTCCTGGTGGTATGTGATCACG
NCTACTCTATTCCCTGTTGTTGTGTTCCCCTTCTTGATTAAGTCTGTTAA
TTTTCCCTTGCGGTGTTGTATGATCCTTGCTTTCTCTTTATTTCTCTTCT
TTTTCATTTTTTTTCTTTTTTTCTTTTTTTATTTTTTCTTTTCTTTTTTT
TTCATTTTTTTTTATCTCTTATTTTCCTTTTTTTTCTTTTCTTTTATTTT
TTATTTTTTTTTTCTTCTTTTTTTATCTTTTTTTTTTTTTTTTTTTTTTC
TTTGCTTTCTCTCTTTTTTCCTTTTTTTTCTTTCTTTTTTTTCTTTTTTT
TTTTATCTTTTTTTTATCTTATTTTTTCCTTCTTTTTTTTATTTTTTTTT
TTTTCTTTTTTCTTTTTTTTTTCTTTTTTTTTTTTTACTTTTCTTTTTTT
TTTTCTTTTTCATTTTTTTATATTTCTCTTTTCTCTCTATTTATTTTTTC
TTTTTCTTTTTTACTTTCTTTTATCTTTTCTTTTATTTTTTATCTTTTTT
TTATTTTATTCTCTCTTTTTTTCTTCTTCTATAACCCTTTATCTTCTTTT
TTTTTCTTCTTT
AAAGCCTTTTTTAGGGTAGCTGNCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCTATTGAGGAGAGGTTTTTCTNNNCCCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTCTTTTAAGAGGGGTTCTTCTTCNNNNNGGNNNGGNGNGGG
GNTTGGTGGTGGGGGTGGGTGTGGTCTGGTTTGTTGGTCGTTTTTGTGGT
GTGTTTGTGTGTGTGGGTGGGTTGTGTTCTGCGTGTGGGTTTGTGTTGTG
TTTTGTTTTGTGTTTTGTTGTTTTGTGTTTGTTGTTGGTGNGTCGGTTTT
TTTTTGTTTTGGGNGGGGGGGNNNNNCNTCCCGCCCNTCCTCCTGTTTTG
GTCTTTGTTTTTTCTTTTGTGTTGTTGTTCGGCGGGGTTTTTTTTTTTTT
CCGGGGGGGGGGGCGGGGGGGCGCGGGCGGGGGGGGGGGGGGGGGGGCCC
CCCCCCGCCTTTTTTTTTTTTTCCCCCCCCGCCCCGGNGNNGGNTTGGGT
GTTTTTTAAAAAAAGAAAAGAGAGGGGGGTGTNTTTTTTTTTTTTTTTTT
GTTTGTTGTTGGTTGTTGTTTTGGTGGTNTTGTTGGGTGTTGGTTGTTTG
TGTTGTTTTGGGGTGTGGTGGTGTGGTGTTGTGCTTGGTTGTTTTTGGTG
TGTGTGTGGTTGTGTTTTGTGTTGTGTTGGGTTGTGGGTGTGCGTGATGT
GTGTTTGTTTGGTGTGTTGATGATAGAAAATAGAATATAGAAAAAAAAGA
AAAAATAAATTGAATATAAAAAATAAAAAGAAAAAAAATAATAAATAATA
AAATAAAAGTGATAAAAAAAAGAAAATAAAATATAGAATATATAGAATAT
AAAATAGTTTAAAAAGATAGATATAATGTAAAAATAAGTATAGTAATAAA
AAGATAGAAGAAAAATAAAAAAAAATTGTTATTTTTTTTTTTTATTATAA
GAAAAAGAAAAGAAAAAATAAAAGAGAAATTAAAAGATATAAGAAATATA
TATTAGTTATGAAAAAAGTAAAGAATTAAGTAAGATAAAGAATATAATAA
TTATTTGATAAAAATATTTAATATAGAGAGATAAAATGTAGGAAAGAATA
AAATTGTATATATAATAAATAATATAAAAAAATTGAAATGAAGATATAAA
AAATATGTAAAATATATAGTTAATATAAATATAATGAAATAATAAGGTAG
TGATAAAATTTAATATATGAATTAAATAATGTAAAATAAAGAATAAGATA
AAATAATATATGAATATATAGTAAGAAAATAAAAATTTTAAAAATATATA
TATTAAAAATGGTTAAAAAAAAAAAAAGAGGAAAATGAAAATATAGAGAT
ATAATAGAAGATTAATTAAGGTAACAAAAATGTAATTAAGTAGAAAAATA
TAAATTATTAGTTAATGAATTAATTATAAAATGTAAATATAGATTAATAA
TTAATAATAATAATTAGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_h17.b1 MSMg01no207_h17.b1 CHROMAT_FILE:
MSMg01no207_h17.b1 PHD_FILE: MSMg01no207_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:28 2005
         (429 letters)



>mm_chr5_118760802_118761629
          Length = 828

 Score =  706 bits (365), Expect = 0.0
 Identities = 400/415 (96%), Gaps = 7/415 (1%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattcctttcagtggtaagtagccttgctcatgcaagtagccctaaactcaactaagc 75
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 626 ggaattcctttcagtggtaagtagtcttgctcatgcaagtagccctaaactcaactaagc 567

                                                                       
Query: 76  gggctactttcatgtacatac---accccacaggataataaataggaggggacgtaggag 132
           |||||||   |||||||||||   |    |||||||||||||||||||||||||||||||
Sbjct: 566 gggctacacacatgtacatacaaaa----acaggataataaataggaggggacgtaggag 511

                                                                       
Query: 133 ttctgaggaggtaggagacagccctgaaagaggacaatggagtgaagttatcaaactatg 192
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttctgaggaggtaggagacagcgatgaaagaggacaatggagtgaagttatcaaactatg 451

                                                                       
Query: 193 tcacacaagggtatgaaattgtcaaacaataattaaaaaaaaaaagttaagagtcacatg 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tcacacaagggtatgaaattgtcaaacaataattaaaaaaaaaaagttaagagtcacatg 391

                                                                       
Query: 253 cagtactgggggatgtctgagagacacccagcaaggaaaggctcctggcttatcctctct 312
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 390 cagtactgggggatgtctgagagacgcccagcaaggaaaggctcctggcttatcctctct 331

                                                                       
Query: 313 cagactcaggtccctggaatctccgagcgcctgcagccagatgatgcgggtttcctcaag 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cagactcaggtccctggaatctccgagcgcctgcagccagatgatgcgggtttcctcaag 271

                                                                  
Query: 373 gccctccgtcctccctgtgtgatattcacacctcctgtgtttacagaagtgcgtg 427
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 270 gccctccgtcctccctgtgtgatattcacacctcctgtgtttatagaagtgcgtg 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 828
Length adjustment: 9
Effective length of query: 420
Effective length of database: 819
Effective search space:   343980
Effective search space used:   343980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)