BAC Information

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BAC

Clone NameMSMg01-207M22
Chromosome5 (Build37)
Map Location 17,863,908 - 17,864,291
singlet/doubletsinglet
Overlap geneGnai1
Upstream geneLOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3, LOC100041818
Downstream geneLOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207M22.T7 (MSMg01no207_m22.b1)MSMg01-207M22.TJ (MSMg01no207_m22.g1)
ACCAG390905AG390906
length1,2011,207
length of high quality
(start - end)
338 (129 - 466)385 (73 - 457)
definitionCHROMAT_FILE: MSMg01no207_m22.b1 PHD_FILE: MSMg01no207_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:12 2005CHROMAT_FILE: MSMg01no207_m22.g1 PHD_FILE: MSMg01no207_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATTANNNNNNAATTCAGTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCATGAAAGAATTCATTGTCCTTTAATCATTTCACTGACTC
CCCACTCACTGACTCTCTTCCTTTAACTCTGTGCTGCTCTTAAATAGCTT
TTCTTTCTTGCCCATTCTCCTGAGAGTTGGGTGTATCCTATCTCTGATCC
ATTCTGTCAATGTCAGGAGCCATCTAGAATAGGTTAAGTCTAGTCGATGG
TTTTCTTGGAGGTGGTCCACCATTTTTTGCATGGTCTGTGATGGGTGAGA
TCTTTGAGGCAAGGTCCTAAAAAGACTTCATCTCAGTATTGTTTCCTCCA
GCTGAAATGCCTTTCTTGTCCTTATACAATTAATATATAATCTCTATGCA
TTAGCCCACCCTATTGGGCAGATTTCTGCAGATCAACAAATACTATCTTG
TAGTGATGCTATATTTTTATCCTTAATTCTTAATAATGATCCTATATGAA
AACATAAAATTACACTATTAATTTTTAAAGCCTTCTTTGATATGAAAACT
GCAATGAGAACTCTGCCAGTCTTCATGTGTCAAGAGATAATTGCTTGAGA
CAGAAAGCAGGTATTTACAACTTAGAACACATTCCAAGAGGTTGTAAAAT
AATTATACAAAGGTTGTAAAAGGGAATTAAAGATTTATTGTAGGAGCAAG
GACAAAAGATAAAATATTAACTGGGTTTATCTATTCAAAACTGCAGTGAT
TGCTGGGTTTTATTAAAAGATAAAGAGAAAATGAATATATTTGATGGAGG
TGTGGTGGGGGAGGTTTTTTTTTTCCTCTTTCTTTTTTTTTCTCTTTTCC
TTCTTTTTTCCTTTTTTTTTCCTCTTTTTTTCTTTTCTTCCTCTCTCTTT
TCTCTCTTTTTTCTTTTTCTTTCTTTTCTTTATTTTCTTTTTTCTTTTTT
TATCTTTTTCTTTTCTCATTTCTTTCTTTACACTTTTTATTTTTTCCTAC
TTCTTTTTCTTTTTCTTCATCTTCTTTTTTACTTTTTTCTATTACCTTTT
CTTTTTTTATCTTCTTTTTCTTCCTCTTATTTCTCTCTTTTATTTTTTTT
CTTTTTTCCTTCTTTTACTTTCTTCTTTATCTTTTTTTTTTTTTATCCTC
TTTTCCTCTTTCTTAATTTTTTTTTCCCTTTTTTATTTACTTTTTTCTTT
C
TTTTTAAACATTGGAGNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCGACAGAAAATACAGTTGTAGAGGAAA
GCAAAACCTCACCATTTAGAAACAACACTTAAAGGAATTCCTTCACTGTT
TCTTTGTTTGCTTGTTTATAACTTTAGAATCCTTCTCTTGCACTGGTTTG
GAGGAATAAGAACTGTATAATTTCTTCTGAAAATCGGGACTCTGGTATAT
CTCTCATTAACTCCCCACAGATGGTAAGAGAGATCAACTTCAGCTGCATG
TTACACACTCAACTATATTTAATTATTAATCTAAAACAGTGGTTCTCCGC
AGAGGTTACATTTCTGCCTCCAGGGGGCGTTTGGCAACATTTTAGGAGAT
TAGAAAGGGTGAGCAGCAATTAGCATCTAATGGGTGGAGGTCAACTTCAT
TGCTAAACATCCAACAAACACACAGGATACCTCCACACACACAGAGAACA
ACAAAGAATTATCAACTTCAAATCGTCAACAGTGATAAAAAGAGATACCT
TGCATTCTGAAGCTTGCAAAAATTCCATTTTTCAAATCTTTCATAGGTGT
CTAATTAAAAGATAAGCTGCCACTATCACCGGGAGGGCTCATTTTACAAC
TGCTTTAAATGTGGTGGATGGTAGCTCCAACTGAGAACAGTGTTACAACC
AAGGAGACCTTCCAAGCAGGTGCTCTGAAGCCACAGAGAAAGAACTGTCT
AATCCCTTTATTTTATGTTTATTGTAAGTTACATGGTTCTGTGGCTAAAA
TTCTAAAAACACGCCGATCTCTTGGAAAGACAGTATCTTTTTAAATAAAA
ACTCAGTCAATCCTATTTACAGAAAAAGATTTATGGCGGAATCTGTGAAG
GGTGAAAAACACCACTCAGGTCTTTTTAAAGGCAAAGTTTATTTCTCCAT
TTGTCTTTTAAATTGACCTCCAATCTTTATTACTTTTAAGCCAGGGCCAA
TTTTTGTTTCTTTCTAAGCCCTACTATTTTTTTTTATAAAATAAAAGTAA
ATTACCCTTCATTTTTTTTTTTTAGATTCTTTTATACCTATTGTTAATTC
TTTGTTTTTTTTTATTAATTTCTAATTTTTGTTCCAACATAAGTTTCTTT
CCATTCTTTACCCACATCTGTTTAATTATAAATGTAATGTTATATATCTT
TTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_m22.g1 MSMg01no207_m22.g1 CHROMAT_FILE:
MSMg01no207_m22.g1 PHD_FILE: MSMg01no207_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:12 2005
         (385 letters)



>mm_chr5_17863708_17864491
          Length = 784

 Score =  685 bits (354), Expect = 0.0
 Identities = 377/388 (97%), Gaps = 7/388 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgacagaaaatacagttgtagaggaaagcaaaacctca---ccatttagaaacaacact 57
           ||||||||||||||||||||||| |||||||||||||||   |    |||||||||||||
Sbjct: 201 tcgacagaaaatacagttgtagatgaaagcaaaacctcaaagc----tagaaacaacact 256

                                                                       
Query: 58  taaaggaattccttcactgtttctttgtttgcttgtttataactttagaatccttctctt 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 257 taaaggaattccttcactgtttctttgtttgcttgtttataactttagaatccttctcat 316

                                                                       
Query: 118 gcactggtttggaggaataagaactgtataatttcttctgaaaatcgggactctggtata 177
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 317 gcactggtttggaggaataagaactgtataatttcttctgaaaatcaggactctggtaca 376

                                                                       
Query: 178 tctctcattaactccccacagatggtaagagagatcaacttcagctgcatgttacacact 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tctctcattaactccccacagatggtaagagagatcaacttcagctgcatgttacacact 436

                                                                       
Query: 238 caactatatttaattattaatctaaaacagtggttctccgcagaggttacatttctgcct 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caactatatttaattattaatctaaaacagtggttctccgcagaggttacatttctgcct 496

                                                                       
Query: 298 ccagggggcgtttggcaacattttaggagattagaaagggtgagcagcaattagcatcta 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccagggggcgtttggcaacattttaggagattagaaagggtgagcagcaattagcatcta 556

                                       
Query: 358 atgggtggaggtcaacttcattgctaaa 385
           ||||||||||||||||||||||||||||
Sbjct: 557 atgggtggaggtcaacttcattgctaaa 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 784
Length adjustment: 9
Effective length of query: 376
Effective length of database: 775
Effective search space:   291400
Effective search space used:   291400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)