BAC Information

Click to search

BAC

Clone NameMSMg01-207N14
Chromosome5 (Build37)
Map Location 45,524,310 - 45,524,574
singlet/doubletsinglet
Overlap genenone
Upstream geneTapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207N14.T7 (MSMg01no207_n14.b1)MSMg01-207N14.TJ (MSMg01no207_n14.g1)
ACCAG390931AG390932
length1,2401,236
length of high quality
(start - end)
320 (130 - 449)332 (118 - 449)
definitionCHROMAT_FILE: MSMg01no207_n14.b1 PHD_FILE: MSMg01no207_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:18 2005CHROMAT_FILE: MSMg01no207_n14.g1 PHD_FILE: MSMg01no207_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAACTATCGCGCTATAGACTCCTATGGGAGAGGATCCGCGGAATTCT
TTGTTCAGCTCTGAGCCCCTTTTTTTAATGGGGTTATTTGATTTTCTGGA
GTCCACCTTCTTGAGTTCTTTAACCCATTGGATATCAGTCCCCTATCCGA
TTTGAGATAGGTAAAGATCCTTTCCCACTCTGTTGGTGGCCTTTTTGTCT
TATTGATGGTGTCTTTTACTTTGCAGAAGCTTTGCAATTTTATGAGGTCC
CATTTATCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAG
GAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCT
CTATAAGTTTTAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCTTTTA
TATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTTGCATTCTTTT
TTATGATCACTGCCAGTTGTGCCAGCACCATGTGAAGAAAATGGTGTCTT
TTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAGGTGACCATAG
GTGTGTGGATTCATCTCTGGGTCTTCATTCTGTTCCATTGGTCTACTTGT
CTGTCACTATTCCAGTACCATGCAGTTTTGATCACAATTGCTCTGTAGTA
CAGTTTTAGGTCCGGCATGGTGATTCCACCAGTGGTTCTTTTATCCTTGA
GAAGAGTTTTTGCTATCCTCAGTTTTTTGTTATTCCAGATGAATCTGCTG
ATTGCCCTTTCAAATTCGTTGAATAATTGAGTTGAAATTTTGATGGCCAT
TGCATTGAATCCTGTTATTGTTTTTGGCTATATTACTCTTTTTTCCATGT
TTGATTCTTGTTTATTCTATTGATTTGGCTATATTTTTTTCTTTTTCTGA
AAATTTTCTTTAATTTTCTTTTCTTTAAACATTTTTGAATTCTTTATTCT
ACTCTAATTTTTTACCTTCTTTTTTTTATAATTCTCTTCTAGTTTTTTTT
TATTTTTATTTTTGTCCTCTTCTTTATAATATTGTTTTTTTTCCCTTTAT
TTTTTTCCTCTATTCCCTTATTAATTTTTTATTGATTTCCTTTCTATCCT
ATATCCCTTCCTATTATCCCTATTTTTTTATATTCTTCTCTTTTCCTTTT
TTTATTCTCTCTATCTATCTTTTTACTTTATTTATACTTCCTCTCCTCTT
GTCCTTTTTTAATTCTCTTTATACTTTTTGTTACTTTTTG
NTTTAAAGTATGGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTTTAAGCCTACCAGGAGCTCAGGGCATCTTTCA
TGTTGCCTATATAGTTGTACTCCACCCAGAACTTCTTCCTATTCTTTTTT
TTTTCTCCTTTTTCTTTCTTTTTTTTTTTTAAATACTTTTTAAACACACT
TTAAAACTGCTGGGTCACTGACTCCTGGACTTCACAGTTGTTAATGAGAA
CTTGTTTCACTTGGATAATTCTTCTCTAAGTATGGCATCCATTTTTGTCT
GGTTTCTTTCACATTTTGTTCCTCTCTGTTTTCATCAAGGTTATTGCGAT
TTTTTTTAGCATAGTTGTCTTTTATTTTGTGCTGCTTGGTATTTCTTATA
TTTCTTAACTCTATAGATTGATTTCTTTGTCAAAATGAGAAAATTCTTTT
TTTAACTGTTTTAGCTTCACACTCTTCTTGAGCTCGAAGAGACCTTTTAG
CACTCCACCCCATCACGAATTGTTCACAATGGACAATTGCTACCCATCTG
TCTTCAAGCTCTCTGAAGCCCTCTCTGGCGTGCCCATCCTTCCATAGAGC
CCAGTCAGTCAGCTATTTTCTTTTTGTCATTGACTTTACAGTTGTAAATT
CTGCCGTTATTTCTTCTTAGCTTTCTGCTGAAAACTATCCTTTCGGTCAT
GTTCCCAGCATCTGCTGTCAACTTTCACATTAGCTGGTTTAAGTCCTTGT
CGGATGAACAAGCAACTATGTCTCTGGTATCAAAAACAAAAACATAATAC
AAACATAATACAAAAAAACGTGTTTGAAGGTATTCTTTTTCTATGAAAGT
GGAAGGTTTTTCTGCATTTCCCTTATGCCAGGGAGGTTAGGATTATTTAG
GGACTCGGGAATTGAATCTTTTTTTATAAATGGAATAATTTTGAACATTT
TTGGTTTGTAAAAACAAAATTTTTTCCCGGGACGGGAGGAATTTTTAAGG
TTTTATATAGGGGGATATCTTCTTTTGTACTTTATTGGTTGGAAAGGGTT
ATGGTTTTCTTCCTTTTAAATGGGGGAGTTCTTTCCAAGATGGATTGGGG
GGTAATTCCTGGGGTCCCTTTTAAATATATGGGGGGTGATATTGTGAGGT
GGACGGTGTGTTTTCCTCGTTATATAAGGTCTTGTATCTCCCTCGGGTGG
GGGTGTGAATATTACTCCNTATCTTGCGTGGTGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_n14.g1 MSMg01no207_n14.g1 CHROMAT_FILE:
MSMg01no207_n14.g1 PHD_FILE: MSMg01no207_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:18 2005
         (332 letters)



>mm_chr5_45524041_45524776
          Length = 736

 Score =  455 bits (235), Expect = e-132
 Identities = 256/265 (96%), Gaps = 4/265 (1%)
 Strand = Plus / Plus

                                                                       
Query: 70  tttttaaacacactttaaaactgctgggtcactgactcctggacttcacagttgttaatg 129
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 270 tttttaaacacactttaaaactgctgtgtcactgactcctggacttcacagttgttaatg 329

                                                                       
Query: 130 agaacttgtttcacttggataattcttctctaagtatggcatccatttttgtctggtttc 189
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 330 agaacttgtttcacttggataattcttctctaagtaaggcatccatttttgtctggtttc 389

                                                                       
Query: 190 tttcacattttgttcctctctgttttcatcaaggttattgcgatttttttt----agcat 245
           |||||||||||||||||||||||||||||||| ||||||||||||||||||    |||||
Sbjct: 390 tttcacattttgttcctctctgttttcatcaatgttattgcgattttttttttttagcat 449

                                                                       
Query: 246 agttgtcttttattttgtgctgcttggtatttcttatatttcttaactctatagattgat 305
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 450 agttgtcttttattttgtgctgcttggtatttcctacatttcttaactctatagattgat 509

                                    
Query: 306 ttctttgtcaaaatgagaaaattct 330
           |||||||||||||||||||||||||
Sbjct: 510 ttctttgtcaaaatgagaaaattct 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 736
Length adjustment: 9
Effective length of query: 323
Effective length of database: 727
Effective search space:   234821
Effective search space used:   234821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)