BAC Information

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BAC

Clone NameMSMg01-208J24
Chromosome5 (Build37)
Map Location 59,063,045 - 59,063,292
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh7, LOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208J24.T7 (MSMg01no208_j24.b1)MSMg01-208J24.TJ (MSMg01no208_j24.g1)
ACCAG391447AG391448
length880722
length of high quality
(start - end)
---248 (432 - 679)
definitionCHROMAT_FILE: MSMg01no208_j24.b1 PHD_FILE: MSMg01no208_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:30 2005CHROMAT_FILE: MSMg01no208_j24.g1 PHD_FILE: MSMg01no208_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCAAGTAGTTGTTTTTNATTGTCTGANNNNNNNNNNNNNNNNNNNNNN
NNNAGNGGCGGAGNGGGNNGAGAGGGGNGNNCGCGCNCGGGGGGGGAGGC
GGAAGGAGGGGGGGACGAAAAAAAGNAGGNGNNAGGNATTTTTTTTAGCA
AAAGAAAGGGGGGGGGGNNNNNNNNNANNGGGGGGAGAGGGGGGAGGAGG
GGGGGGAGGGGGGAGGAAGGGAGGGGGGGGGGAGGGGAGGGAGAGAGGGG
GGGGGAAGAAAGAGAGAGGAGGGAGGGGGGGGGAGGGAGAGATGGGAGTT
GNGTGGGTGGGGGGGGGGGAGGGGGGGAGAGGGGTGGGGGCGAGGGTTTG
GGGGGGGGGNGGGAAAGAGGAGGGGGAGAGGAGGAGGTGTTTTGTTTTTG
GGGGGGGGGGGGGGAGGAGGGGAGGAGAATGTTTTTTGGGTTGGTTTTTT
AGAAGCGGGCGGGGTGGAGGGGAGAGTTGTTTTGTGTTGTTTTTTTTTGT
GTTTTTTTTTATTATTTTTTATTTTAATTTTTTGTGGTGGTTTGTTTTGG
GGGTTTTTTATTTTAATATTATTTTGTTTGTAGTTGTTGTTGTTTTTGGG
TGTTTGTTTGTGTGTTGTTTTTTTTTTGTTGTTAGGTTGGTTGTTTTTTT
TATGTTTGGTGTTTTTTTATGTGGTTGGGTGTGTGTGTTGTGTGGATTTA
TGTTTTTGGGATTTTTTTGGGATTTTTTTGTTTTTGTGGTTGTTGTGTTT
TGTGTGGGTTGTGTTTTTTTGTGTTTGTTTATGTTTGGGATTTGTTTTTT
TGTTTTTTGTTGTTTTGGTTTGGTGGATAGTGGTGTTGTTGATTAGATTT
TGGTTATGGGTTTGTGGTAAGTATGTGGTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGAGACTATGTCATGAAACATTCAAAA
ACAGTGAATGTCTTCCATTCAAAGACTTAGCAGTTATGCGCATGTTTGAT
GTACATAATCTTCAATAGATAATAAGATCTTCCAAAGAGAAGAGTTAAAT
AGGAGAAATTATGGGAACTAAGCTTTATTACAAATCTTCATAGAGTGAGA
GCATATTTAAAAAACATCTCTCATGTGTTAGCAACATTTTAGAGTACTTT
TACAAAACGTATAAGGTAAAGAAACAGAGATAATATAATATGACCCAGGT
AGGTGTGATTAAGTANCTTGCCCCCCCCCCCTCTTATAATAATACAACCT
TCACTGTTCTTTATGCCGCAAATTGAAAACCATTTCTAGCATATGTTTAT
AGGTTTTGACAGAAAATTTTGTAAACCATTTCAAGAAGTTAGACACTAAA
ATATATGAAATTGTATTTGTTCATATGCTTTGTTCTATTATTAAGTGTAA
AAAAATCTAGATTATTATGCAGTGACATAATAGTGATGCAAGTCACACTA
CATAGGTGCAAGTGAACACTAGTTATTTTTAACATTTTATTTTGGCTTTT
CTTTTTTTCTTGTTTATTTTTAAGACATTTCAAATAACTATTTTAATTCT
TTGAGATTAATGTGCAATGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_j24.g1 MSMg01no208_j24.g1 CHROMAT_FILE:
MSMg01no208_j24.g1 PHD_FILE: MSMg01no208_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:30 2005
         (248 letters)



>mm_chr5_59062845_59063492
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttctagcatatgtttataggttttgacagaaaattttgtaaaccatttcaagaagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atttctagcatatgtttataggttttgacagaaaattttgtaaaccatttcaagaagtta 389

                                                                       
Query: 61  gacactaaaatatatgaaattgtatttgttcatatgctttgttctattattaagtgtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gacactaaaatatatgaaattgtatttgttcatatgctttgttctattattaagtgtaaa 329

                                                                       
Query: 121 aaaatctagattattatgcagtgacataatagtgatgcaagtcacactacataggtgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaaatctagattattatgcagtgacataatagtgatgcaagtcacactacataggtgcaa 269

                                                                       
Query: 181 gtgaacactagttatttttaacattttattttggcttttctttttttcttgtttattttt 240
           ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 268 gtgaacactagttatttttaacattttattttgtcttttcttttttttttgtttattttt 209

                   
Query: 241 aagacatt 248
           ||||||||
Sbjct: 208 aagacatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)