BAC Information

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BAC

Clone NameMSMg01-209N03
Chromosome5 (Build37)
Map Location 91,940,979 - 91,941,530
singlet/doubletsinglet
Overlap genenone
Upstream geneAfm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
Downstream gene9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209N03.T7 (MSMg01no209_n03.b1)MSMg01-209N03.TJ (MSMg01no209_n03.g1)
ACCAG392198AG392199
length737735
length of high quality
(start - end)		556 (45 - 600)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no209_n03.b1 PHD_FILE: MSMg01no209_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:05 2005CHROMAT_FILE: MSMg01no209_n03.g1 PHD_FILE: MSMg01no209_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGCCTCCTCTGTGAAAGCTACTCATTCCCCAAGCATCTCTCATGT
CTAGGTTGTCTGTGCATGGTCTTAAATTTTTCTCCTGTTAATCTGCCTTT
CATATGAGGGTGTCCAGGCTAAGCTTATATGACAAAGTCAAAATTGCTTT
TCCTCTCATATGATACTGGCATCCTAAATTTGAAAATCAGTTAAGATACT
TGGAGTTGAAAGAAGTTGAAGGATGCTAAGATATACAGTACCAGGGAACG
TGTCCTCCTCAGTGGGGTCAGGGATGAAACATGCCTGCATCCGTTTGTTT
ATGCCTTTATATCAAGAGCTGGTTTCTTCAGAGACTTCTCTTGGTCCTTT
TATAGTGTTCCTGAGGGATAAAATCTGAGAAAACCTGCCTTTTACTGACT
TCATTTCTTTTTGATCATTGTTAAAATGAATTTTTAGTGTTATGGACTTT
CAACATTTTATAAAAACATTGCCCTTGACTGACTTAGTTTTTGACATCTG
AATGTGCTGTACTTCATGGACACTGTTAGGTGAGATATGCCAGACCCCAC
AGAAATATTATTTCTGGAACGATATTCTCATGGTTGAGGAAAGAGAAATC
TGGGCTATAGAGCTGTGTGAGGTGGCGTAACAGTGACTACGCGCGAGGTG
TTGGCCTTTCTACCCGGCTAAACAGGATCTCACTCCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTACAGCTGATTAACAACTTCAGC
AAAGTAGCTGGATATAAAATTAACTGAAAAGAAATCAGTAGCCCTGTTTA
TACAACTGATAAACTGATAAACCATCTGAGAAAGAAATTGGGGAAACAAT
ATTCTTCACAATAGCCACAAACAATATAAAATATCTTGGTGTGATTCTAA
CCAAGCAAGTGGGAGATCTATGTAACAAGAACTTCAAGTTCCTGAAGAAA
GAAATGTAAGAAGAACTCAGAATATGGACAGATCTCTCATGCTCATGGAT
TGGAAGGATTATCATATTGAGAATCGCCCCTCTTTCCAAAAGCAATCTAT
AGATTCAATGCAGTTCCCATAAAAACTCCAACACAATTTTCATAGACCTT
GAAAGAGCAATTCTCAATTTCATATGAAAAAAAAAAGAGAGAAAACTAGG
ATAGCCAAAACAATCCTGAACAATAAAAGAACCTCTGGAGGAATCATCCT
CCCTGATAAAAACAAACAAAACAAAAACAAAACAAAACATGGTATTGGTA
CAGAAACAGACATGTTAATCAATGAAATAGAAGTAAAAGAGCCAGACATA
AACCCACACAACTATGGACTCTTGATTTTTGACAAAGAAGCCCAAAACCA
TACAATGGGAAAGAAGAAAGAATCCTCAACAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_n03.b1 MSMg01no209_n03.b1 CHROMAT_FILE:
MSMg01no209_n03.b1 PHD_FILE: MSMg01no209_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:05 2005
         (556 letters)



>mm_chr5_91940613_91941568
          Length = 956

 Score = 1000 bits (517), Expect = 0.0
 Identities = 544/553 (98%), Gaps = 2/553 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagcctcctctgtgaaagctactcattccccaagcatctctcatgtctaggttg 64
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 918 gaattcaagcctcctgtgtgaaagctactcattccccgagcatctctcatgtctacgttg 859

                                                                       
Query: 65  tctgtgcatggtcttaaatttttctcctgttaatctgcctttcatatga-gggtgtccag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| 
Sbjct: 858 tctgtgcatggtcttaaatttttctcctgttaatctgcctttcatatgaggggt-tccaa 800

                                                                       
Query: 124 gctaagcttatatgacaaagtcaaaattgcttttcctctcatatgatactggcatcctaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gctaagcttatatgacaaagtcaaaattgcttttcctctcatatgatactggcatcctaa 740

                                                                       
Query: 184 atttgaaaatcagttaagatacttggagttgaaagaagttgaaggatgctaagatataca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atttgaaaatcagttaagatacttggagttgaaagaagttgaaggatgctaagatataca 680

                                                                       
Query: 244 gtaccagggaacgtgtcctcctcagtggggtcagggatgaaacatgcctgcatccgtttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtaccagggaacgtgtcctcctcagtggggtcagggatgaaacatgcctgcatccgtttg 620

                                                                       
Query: 304 tttatgcctttatatcaagagctggtttcttcagagacttctcttggtccttttatagtg 363
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 619 tttatgcctttatatcaagagctgatttcttcagagacttctcttggtccttttatagtg 560

                                                                       
Query: 364 ttcctgagggataaaatctgagaaaacctgccttttactgacttcatttctttttgatca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttcctgagggataaaatctgagaaaacctgccttttactgacttcatttctttttgatca 500

                                                                       
Query: 424 ttgttaaaatgaatttttagtgttatggactttcaacattttataaaaacattgcccttg 483
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 499 ttgttaaaatgaatttttagtgttatggactttcaacattttacaaaaacattgcccttg 440

                                                                       
Query: 484 actgacttagtttttgacatctgaatgtgctgtacttcatggacactgttaggtgagata 543
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 439 actgacttagtttttgacatctgaatgtgttgtacttcatggacactgttaggtgagata 380

                        
Query: 544 tgccagaccccac 556
           |||||||||||||
Sbjct: 379 tgccagaccccac 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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