BAC Information

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BAC

Clone NameMSMg01-209O12
Chromosome5 (Build37)
Map Location 14,572,180 - 14,572,423
singlet/doubletsinglet
Overlap genePclo
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209O12.T7 (MSMg01no209_o12.b1)MSMg01-209O12.TJ (MSMg01no209_o12.g1)
ACCAG392246AG392247
length745710
length of high quality
(start - end)
271 (45 - 315)247 (431 - 677)
definitionCHROMAT_FILE: MSMg01no209_o12.b1 PHD_FILE: MSMg01no209_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:13 2005CHROMAT_FILE: MSMg01no209_o12.g1 PHD_FILE: MSMg01no209_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGAATTTTGGTTTCATTAAAGAACATGGAAATATAAGAATGTGGT
TTTTTTTTTTTTGTTTTAATCCCAGGGGTAAGGATGTGAGGATGCTTCGG
GACTGTCTGCTGCAGCTGACTATGATTTGCCTTCTGCTCTAGCAGAGGCA
TGATTTTGCTAGTTGAAGATAGTTTTTGCGATTGTGTGACATTCTGAATT
CGGTGAACTTTTCAGATGGTATATAAATGCTAGGACTCTCAGAGGTGTGG
GTGGTTGGCGGTTATTGTTTGTTGGCTGTGGGTGCGGCCNCCNNNNNCGG
TTTTGNGTGTTTCCCGAGGGCGGNGCCCCCGGGGTATTTTTTTTGTTTTT
GGTTTTGTTTCTCCCCCAAAAAAAAAAAAATACGGGGGGGGGGGGGGGGT
TTCTTTTTCCTCTTCTCTTATTTTTCGCCTTTTTCTCTTCTCTTTCCTTT
TCTCTCCCCCCTTACTTCCTTATATTTTTAATTCCCTCCTTTCTATCCCC
GATTAATCTATCTCTTTTTCCCTATTCTCCCTCCTCTTATCCCCACAACA
TTGCTTATATGCCGTTTTTTTTTCCGCCTTCCTGTCTTTCTTAACCCCTT
TTTTCTCGTCTCGCTATATTTTTACCAAACAAACTCCCCTTTTCCCCAAT
ACGCTGAATTCCTTTCTTGTCTTTTCCTCCTTTTCCCTCCCTTCC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAACAGTTTTGTCATTATTTC
ATTTTGTCTCTTAACTGCATCCCACTGAAATTTGATCTCTCAAAAACAAA
ATCCCTCTGTCTCATGAGAATATCAACTGTGTTGGAATAGGGACCTTGAA
AATGTTGTGCTTTCAAGTCAGTGCAAAGCTGTAAACATTATTAAATTTGA
GCCGATTAATTTATGTTGTTCAATAACTCGAAGTGAAATCACTGTTCCTC
AAAGGACTAGATCATAATTTTAGGATGTTCTTATTAAGTCAAAGTGTAGC
TTATGCTTTCTAGATTTCCNAGGCAACCCCAACAACAAGCCACTCTCCAT
CCTTCTGGGTTCAGCTGCTATAAAAAAAGAGACTTTCTTTCCATGTGTGC
TGTGTTTGAATCCCCAATTAAATAAATATATTTTGTTTTCTTTGTCACAG
GAAAAAAATAACTGTAGGATATATAAGATTTTTATTAAGAAAATAAAGAA
GCATTTGAAAGTTTAGTTATAAAAATTTTGTTAATGACTTAGTACTATCT
AAGAACAAAGAGGAGTGTTCTAAGCACCCTTTCTAAACATTTCCAGCTAA
ACATCAGATTCCAAGAACACTTCAGAGTTAAGTCAGTTCTTCATTGTTGT
GGTGAAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_o12.g1 MSMg01no209_o12.g1 CHROMAT_FILE:
MSMg01no209_o12.g1 PHD_FILE: MSMg01no209_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:13 2005
         (247 letters)



>mm_chr5_14571980_14572626
          Length = 647

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gactttctttccatgtgtgctgtgtttgaatccccaattaaataaatatattttgttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gactttctttccatgtgtgctgtgtttgaatccccaattaaataaatatattttgttttc 260

                                                                       
Query: 61  tttgtcacaggaaaaaaataactgtaggatatataagatttttattaagaaaataaagaa 120
           |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 261 tttgtcacaggaaaaaaataactgtagggtatatacgatttttattaagaaaataaagaa 320

                                                                       
Query: 121 gcatttgaaagtttagttataaaaattttgttaatgacttagtactatctaagaacaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatttgaaagtttagttataaaaattttgttaatgacttagtactatctaagaacaaag 380

                                                                       
Query: 181 aggagtgttctaagcaccctttctaaacatttccagctaaacatcagattccaagaacac 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 aggagtgttctaagcaccctttctaaacatttccagctaaacatcatattccaagaacac 440

               
Query: 241 ttca 244
           ||||
Sbjct: 441 ttca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)