Query= MSMg01no210_d05.b1 MSMg01no210_d05.b1 CHROMAT_FILE:
MSMg01no210_d05.b1 PHD_FILE: MSMg01no210_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:38 2005
(168 letters)
>mm_chr5_128465757_128466324
Length = 568
Score = 275 bits (142), Expect = 1e-78
Identities = 157/162 (96%)
Strand = Plus / Minus
Query: 5 gaattcagcttctgatttgggtttccagcatctaaactgccaggctctagtgagagctgg 64
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 329 gaattcagcttctgatttgggtttccagcatctaaactgtcaggctctagtgagagctag 270
Query: 65 tatccagtgttcttgaactgactctgaacaggacccgggccagcaatagcactttggcat 124
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 269 tatccagtgttcttgaattgactctgaacaggactagggccagcaatagcactttggcat 210
Query: 125 gcaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 166
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gcaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 168
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space: 89600
Effective search space used: 89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no210_d05.g1 MSMg01no210_d05.g1 CHROMAT_FILE:
MSMg01no210_d05.g1 PHD_FILE: MSMg01no210_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:38 2005
(441 letters)
>mm_chr5_128443313_128444153
Length = 841
Score = 810 bits (419), Expect = 0.0
Identities = 436/442 (98%), Gaps = 1/442 (0%)
Strand = Plus / Plus
Query: 1 caggtatgtgttgtcccagagccttgagtttcaagggcatgccaggctctgttatgatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtatgtgttgtcccagagccttgagtttcaagggcatgccaggctctgttatgatca 260
Query: 61 gagttagtcgatgaaccaacactgatcatacgcccatctcaagagctactctcaacatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagttagtcgatgaaccaacactgatcatacgcccatctcaagagctactctcaacatgt 320
Query: 121 ccagttagagactctgtaggatttcaccggggtgacatggtgaaggagtctatactcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagttagagactctgtaggatttcaccggggtgacatggtgaaggagtctatactcagc 380
Query: 181 tgtggtggaatcattcacatagaaatcctccccatccaaggctcagggaccagagagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtggtggaatcattcacatagaaatcctccccatccaaggctcagggaccagagagaaa 440
Query: 241 gagtgagtggaaagaatgtaagagccagcaggtagagaagggggagtggcctgaaatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtgagtggaaagaatgtaagagccagcaggtagagaagggggagtggcctgaaatgat 500
Query: 301 gacttctgggttgctacacaacaacagctcatagaaactgtggccccctgcacatgacca 360
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 501 gacttctgggttgctacacaacaacagctcatagcaactgtggtttcctgcacatgacca 560
Query: 361 agcgttgaaattctcacatgatttgaggggcngggggggggg-tccctacagctctaccc 419
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 561 agcgttgaaattctcacatgatttgaggggcggggggggggggtccctacagctctaccc 620
Query: 420 ttggcagtttatggctgatgag 441
||||||||||||||||||||||
Sbjct: 621 ttggcagtttatggctgatgag 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
