Query= MSMg01no211_j11.b1 MSMg01no211_j11.b1 CHROMAT_FILE:
MSMg01no211_j11.b1 PHD_FILE: MSMg01no211_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:52 2005
(332 letters)
>mm_chr5_17252996_17253721
Length = 726
Score = 505 bits (261), Expect = e-147
Identities = 280/289 (96%), Gaps = 6/289 (2%)
Strand = Plus / Minus
Query: 43 ctcatactttaaattttacatggaatgagtattcagtagacatttttttctttgtttgtt 102
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 525 ctcatactttaaattttacatggaatgagtattcagtagacattt-----tttgtttgtt 471
Query: 103 attacccctccccccaccaggaaatcatctatattcataaacgtcagggctaatattgac 162
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 470 attacccctgcccccaccaggaaaccatctatattcataaacgtcagggctaatattgac 411
Query: 163 agatggtgctacaaatgagattggagaaataaggacaaaagaaaattcagagagaagaaa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agatggtgctacaaatgagattggagaaataaggacaaaagaaaattcagagagaagaaa 351
Query: 223 gagaaagatagagttaaaaaggaggagaggtagatacaaaagcaatagaggaagacagac 282
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gagaaagatagagtttaaaaggaggagaggtagatacaaaagcaatagaggaagacagac 291
Query: 283 tccagtgccacgtggctcagctgcacctgtgacggatctctcctccaca 331
|||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 290 tccagtgccacgtggctcagctgcacctgtgacggatc-ctcctccaca 243
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 726
Length adjustment: 9
Effective length of query: 323
Effective length of database: 717
Effective search space: 231591
Effective search space used: 231591
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no211_j11.g1 MSMg01no211_j11.g1 CHROMAT_FILE:
MSMg01no211_j11.g1 PHD_FILE: MSMg01no211_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:52 2005
(300 letters)
>mm_chr5_17205238_17205938
Length = 701
Score = 559 bits (289), Expect = e-164
Identities = 298/301 (99%), Gaps = 1/301 (0%)
Strand = Plus / Plus
Query: 1 tttgtaaggtagaaaaagtctcataggttatctagact-gcctaaaatatgcactgatta 59
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tttgtaaggtagaaaaagtctcataggttatctagacttgcctaaaatatgcactgatta 260
Query: 60 ccattgtgttaagtaaataaattaatattaacctttctgagatatcttattattacaatg 119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccattgtgtaaagtaaataaattaatattaacctttctgagatatcttattattacaatg 320
Query: 120 atgcttgcttttcccaggcacatgaataattttatttaaccatcaaattttttctctgag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcttgcttttcccaggcacatgaataattttatttaaccatcaaattttttctctgag 380
Query: 180 gaagtataagaatataagctccattgagctggaaagataacttggccctcaaaggctagt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagtataagaatataagctccattgagctggaaagataacttggccctcaaaggctagt 440
Query: 240 ctcaaaacccaaacctgaagatagactttgtgggttcaggtgacttgatttgttatattt 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ctcaaaacccaaacctgaagatagactttgtgggttcaggtgacttgatttggtatattt 500
Query: 300 a 300
|
Sbjct: 501 a 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 701
Length adjustment: 9
Effective length of query: 291
Effective length of database: 692
Effective search space: 201372
Effective search space used: 201372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
