BAC Information

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BAC

Clone NameMSMg01-211L16
Chromosome5 (Build37)
Map Location 30,019,501 - 30,019,662
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c
Downstream geneLOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211L16.T7 (MSMg01no211_l16.b1)MSMg01-211L16.TJ (MSMg01no211_l16.g1)
ACCAG393344AG393345
length782701
length of high quality
(start - end)
189 (35 - 223)77 (217 - 293)
definitionCHROMAT_FILE: MSMg01no211_l16.b1 PHD_FILE: MSMg01no211_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:07 2005CHROMAT_FILE: MSMg01no211_l16.g1 PHD_FILE: MSMg01no211_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGGG
TTCCCCTGATGGTTCCTGTCCTTACCCTTGTTGTGGTGAGGTCTGGCTGG
CCACCCATCATCCCTCCTCTCAGTCTCCATCATAATGGCTACCTTCTCTG
ATTTTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATGTATA
TGCATATACTATTGTATATACTATATCTGTCTCCCCACACACTATAAGTG
TTCACCTACATCTCATTACATACGCTTGCGATACATCATGTGGTTGCTGG
CAACTATTTTTTTGCCTCCCGTTAGAGCATTCCACGCTCTTATAAATTTT
TTTTTTTCCCCCCCCCCCCCCCCGAATTTTTTTATTAAGATATTAATTAT
TTTACCCATTATAAAAAAAAAAAAAATACCCTCCCTTTTTTGCTGTCGTT
CTTTTCCAGCCTTTACTCCTTTTATTTCCCCCACACCCTTTACTTTCCCA
CCCCCTTCTTTTTTCTTTTTTCCCTTCTTTCCTCTTTTATCACCCTTTTT
TCCTTCACCCCCCCCTTTTTTCCCCCCCTTTTTTACCCCTATTTTTTTCC
CCCTCTCCCCCCTTTTTTTTCCCTTTTTTCCCTACATTTAACCCCATTTA
TTTCCCCTCTTTCATTTCTTTTTTTTTTGCCCCTTTTTCCCCCCCCCCTT
CCCCCTTTTCCCCTCCCCTTTTTCCCTCCTTTTTTTATTTCACCCACCTC
CAACACCCCACTTTTTTTCTTTTTATCCTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTGTTTAGCTCTGTATCCCATTTTTTAATGGGGTTATTTGAATT
TCTGGAGTCCAGTTTCTTAAGCTCTTTGAATATATTGGGAATAAGCCCCC
TATCAAATTTAAAATTGGTAAAAATCCTTTCCCAATCTGTTTGTGGCCTT
TTTGTCTTATTGACAGGGTCTTTTTCCTTACAGAAGCTTTGAAATTTTAT
GAGGCCCCATTTGTCGATTCTTGATCTTACAGCACAAGCCATGGCGGTTC
TGTTTAGGAATTTTTCCCCGGGGCCCAAATCTTCAAGGTTTAAGGTAACT
TCGAGGTCAAAGCCTTAAGGGTCTTTGGTTATATGGGGAGGTCTTTGATC
CAATAAGTCATGGGAATTTGTTCCGGGGGATAAGAATGCATCAATTCGCA
TTCTTCTACATGACAACTGCCAGTTAATGCCTGAACCATTTGTTGATGCC
AGTGCCTGGCAAATACAGAAGTGGATGTTCACAGCCATAGGATGGAACAC
AGGGCCCCCCCATGGAGGAGCTACAGAAAGACCCAAGGAGCTGAAGGTGT
CTGTTATCCTATCACTGGCACATCCCATGATTTACTCTAGCATCCCTAAA
GCTTTTGCCCCTAGCTGCCTATGTATTAAACCACGCCCCATTCTTTCCTC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_l16.b1 MSMg01no211_l16.b1 CHROMAT_FILE:
MSMg01no211_l16.b1 PHD_FILE: MSMg01no211_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:07 2005
         (189 letters)



>mm_chr5_30019344_30019929
          Length = 586

 Score =  238 bits (123), Expect = 2e-67
 Identities = 159/185 (85%), Gaps = 23/185 (12%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgggttcccctgatggttcctgtccttacccttgttgtggtgaggtctggct 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaattctgtggcttcccctgatggttcctgtccttacccttgttgtggtgaggtctggct 260

                                                                       
Query: 65  ggccacccatcatccctcctctcagtctccatcataatggctaccttctctgattttatg 124
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||  
Sbjct: 259 ggccacccatcatc---cctctcagtctccatcataatggctaccttctctgatttta-- 205

                                                                       
Query: 125 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatgtatatgcatatactattgtata 184
                             |||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 204 ------------------tgtgtgtgtgtgtgtaaatgtatatgtatatactaatgtata 163

                
Query: 185 tacta 189
           |||||
Sbjct: 162 tacta 158



 Score = 70.3 bits (36), Expect = 7e-17
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 123 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta 158
           ||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta 552



 Score = 66.5 bits (34), Expect = 1e-15
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 124 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 157
           ||||||||||||||||||||||||||||||||||
Sbjct: 516 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 189
Length of database: 586
Length adjustment: 8
Effective length of query: 181
Effective length of database: 578
Effective search space:   104618
Effective search space used:   104618
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)