Query= MSMg01no212_j23.b1 MSMg01no212_j23.b1 CHROMAT_FILE:
MSMg01no212_j23.b1 PHD_FILE: MSMg01no212_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:26 2005
(552 letters)
>mm_chr5_133340142_133341093
Length = 952
Score = 899 bits (465), Expect = 0.0
Identities = 530/555 (95%), Gaps = 8/555 (1%)
Strand = Plus / Plus
Query: 5 gaattctggtaacaaatcctttggttgaaatgaatcaaccagacaaaatagggtggcaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattctggtaacaaatcctttggttgaaatgaatcaaccagacaaaatagggtggcaca 258
Query: 65 cacccaaaatctcaccatttaggagacggacacaagagaatcaagaattcatgactggcc 124
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cacccaaaatctcagtatttaggagacggacacaagagaatcaagaattcatgactggcc 318
Query: 125 taaggtatataaagagaccatgtcttaaaataaaatgaacacaaa------cacaagcag 178
|||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct: 319 taaggtatataaagagaccatgtcttaaaacaaaatgaacacaaacacatccacaaacag 378
Query: 179 cactaacataattgaaggaagtgctggggagacagcttggctggtaaaggcttgcttcaa 238
||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||
Sbjct: 379 cactaacataattgaaggaagggctagggagacagcttgcctggaaaaggcttgcttcaa 438
Query: 239 agttttacaacct-aagttcaattctaggtacccacatggaggagcaggctgactcacaa 297
|| |||||||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 439 agccctacaacctgaa-ttcaattttaggtacccacatggaggagcaggctgactcacaa 497
Query: 298 aagttgtcctctgacttctatatgcatggatgtgcgtgtatatatccctgccaactaaac 357
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 498 aagttgtcctctgacttctatatgcatggatgtgtgtgtatatatccctgccaactaaac 557
Query: 358 aaatgtgacaaagtgcacttactacatattttaaaaaagaaacaaaaggaccaccgcaat 417
||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaatgggacaaagtgtacttattacatattttaaaaaagaaacaaaaggaccaccgcaac 617
Query: 418 ccatgatgatctctctgccatccaactgctgagtgtacacttggctctctgtgtggtgtt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ccatgatgatctctctgccatccaactgctgagtgtacacttggctctctgtgtggtgtt 677
Query: 478 aagtgaatgtatttgtcagttcatttctgtagctcatgcaaattgtgagagcccaagagg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aagtgaatgtatttgtcagttcatttctgtagctcatgcaaattgtgagagcccaagagg 737
Query: 538 gattaaaggaaggta 552
|||||||||||||||
Sbjct: 738 gattaaaggaaggta 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no212_j23.g1 MSMg01no212_j23.g1 CHROMAT_FILE:
MSMg01no212_j23.g1 PHD_FILE: MSMg01no212_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:26 2005
(646 letters)
>mm_chr5_133365767_133366815
Length = 1049
Score = 822 bits (425), Expect = 0.0
Identities = 460/475 (96%), Gaps = 7/475 (1%)
Strand = Plus / Minus
Query: 179 ctgggcacgctgtcagccctaactacttggaaaggtccaggttagtgaaagaccctgtgc 238
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1049 ctgggcacgctatcagccctaactacttggaaaggtccaggttagtgaaagaccctatgc 990
Query: 239 caagaaagtagatggatcctaacaaagactacttaagcctgtcctctgttctatata--- 295
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
Sbjct: 989 caagaaagtagatggatcctaacaaagactacttaagcttgtcctctggcctatacaaca 930
Query: 296 -acacacacacatgcacatgcacgtgcacacgcgtgtgcacacacacacacacacacaca 354
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 929 cacacacacacatgcacatgcacgtgcacacgcgtgtgcacacacacacacatacacaca 870
Query: 355 catatatacacaggcacacaggcacatatgcatgcagagtcatctccaagactccctttt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 catatatacacaggcacacaggcacatatgcatgcagagtcatctccaagactccctttt 810
Query: 415 ttt---aacatataagaaagatacagcacaagacatagcatagtggagtccagttcaata 471
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tttttaaacatataagaaagatacagcacaagacatagcatagtggagtccagttcaata 750
Query: 472 aatgagcaattccagaccttagagctcttgaggaccaggagggaggcaaattcagtaaat 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aatgagcaattccagaccttagagctcttgaggaccaggagggaggcaaattcagtaaat 690
Query: 532 gatgagccttcccttttccctgccctttactggggcatacaggacccatgggttggtatg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gatgagccttcccttttccctgccctttactggggcatacaggacccatgggttggtatg 630
Query: 592 tggtcctcccttctcccctggggctgttgcctaccagaccactaggacaagggga 646
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 629 tggtcctcccttctcccctggggctgttggctaccagaccactaggacaagggga 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1049
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1039
Effective search space: 660804
Effective search space used: 660804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
