BAC Information

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BAC

Clone NameMSMg01-212O18
Chromosome5 (Build37)
Map Location 24,231,817 - 24,410,769
singlet/doubletdoublet
Overlap gene2810046M22Rik, Crygn, Rheb, Prkag2
Upstream genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1
Downstream geneGalntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212O18.T7 (MSMg01no212_o18.b1)MSMg01-212O18.TJ (MSMg01no212_o18.g1)
ACCAG394102AG394103
length714712
length of high quality
(start - end)
313 (40 - 352)278 (72 - 349)
definitionCHROMAT_FILE: MSMg01no212_o18.b1 PHD_FILE: MSMg01no212_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:49 2005CHROMAT_FILE: MSMg01no212_o18.g1 PHD_FILE: MSMg01no212_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,231,817 - 24,232,124)(24,410,492 - 24,410,769)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTCTCGAGCAGACCTTGATTTGCCTACGTGTAGCAGCTCTTAAGCTTGTA
AGGGCACAGACAGCTCAGCAGTTAAGAGCGCTGGCTGCTGCCCAACAAAT
GGGCTCCAACCCTAAGACCTAAGGCTACATAGAGGTCAGCCCTCCACAGA
AGGAACGCCTGCATTCACAGGCAGAGCACAGGGATGTAGGCTGGCTCTGG
TTGGCCATGTGGCCAGGGCACAACTTCCCTATAGCAAGATCCTGAGAAAA
ACTAGTAGCCACAAGCAGCCGACGGCTGTGGACCAGCTTGGCAGCCTTGG
TTTATTCCTCCACCCCCACCCCCGCTTGGGGAATGCTAAAACTTCACTCA
CCACCAGCCCCCATCCAGAAATCACAAGACATTTTGCATCAAGAATTAAG
TCTGCCTTTGTTCATTTCTGGTTCATAAGCTGGTGTCAACACGGCTTGTA
GAGATGGCTCAGCAGCTAAGAGCACTAGATGTTTTTACAGAGGACCCAGG
TTTCATTCCCAGCACCCATGTGGCTCACAACTATCTGTATGTCCATTTCC
ATAGTAATTAGTGTCCTCTTCTGGCTCCTTGGGTACCAGGGACAAACTTG
GTGCACAGACAGACGCAAAGGCCAAACACCTATAGACATAAAGTACAAGC
TTTAATTAAAAAAN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGGTATGATGAGCGCAAAGCCGTGAGA
CCAGAACATCTCCAGGGCCATCGCTTTATGGGTTTAAACTCTGGGGCCTG
TCACATCATTTTCCTGTTTGTGTTTATCTATCCTAATTGCCTTGAATTTA
TTTCTTGGCCAGGTGTGAACCTGGACATACTCTCGACTGCTATAAAGATC
ATCCCCCTGCAGTTGCATGCCCCGCAGTTCAGCCTGCCAGAACCCCTACT
ATTCACCAGCTTGGATGCTCTCGTAGGCTTGAGGTCCATTCCTGGCTCCC
ATTTTTTTCGTCCCCNAGCCTACCCCTGTAGAGAGGTTCAGGGTTAAGGT
GACTTGTGCCCCCGCAAATCACACATCTGCCCTTGCTGATTGGTTTCTCC
TCACCTTCGTCATCTGTCCCAACACCAGCACCCTGGGTTCCCTCCCGCCC
TCACGGTTCTCCATGGGCAGATTCCAGACCTCACTCACACAGTCTTACTG
TGGGAAGCCGGGCTAACTGAGTCCAGGATGATCAGAAATAATGAAGGAGT
TGGTGCGAGATAGCTCACATGGTTACGTTTGCTGCTCCAGCGTGTTGTTG
TAGTTTGCTTCCTGCCTCTGTAACAAACCTATTGACCAAAAGCTTCTTAG
GGTATAATGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_o18.b1 MSMg01no212_o18.b1 CHROMAT_FILE:
MSMg01no212_o18.b1 PHD_FILE: MSMg01no212_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:49 2005
         (313 letters)



>mm_chr5_24231614_24232326
          Length = 713

 Score =  572 bits (296), Expect = e-168
 Identities = 305/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttctcgagcagaccttgatttgcctacgtgtagcagctcttaagcttgtaag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttctcgagcagaccttgatttgcctacgtgtagcagctcttaagcttgtaag 263

                                                                       
Query: 64  ggcacagacagctcagcagttaagagcgctggctgctgcccaacaaatgggctccaaccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggcacagacagctcagcagttaagagcgctggctgctgcccaacaaatgggctccaaccc 323

                                                                       
Query: 124 taagacctaaggctacatagaggtcagccctccacagaaggaacgcctgcattcacaggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taagacctaaggctacatagaggtcagccctccacagaaggaacgcctgcattcacaggc 383

                                                                       
Query: 184 agagcacagggatgtaggctggctctggttggccatgtggccagggcacaacttccctat 243
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaacacagggatgtaggctggctctggttggccatgtggccagggcacaacttccctat 443

                                                                       
Query: 244 agcaagatcctgagaaaaactagtagccacaagcagccgacggctgtggaccagcttggc 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 agcaagatcctgagaaaaactagtagccacaagcagccgatggctgtggaccagcttggc 503

                   
Query: 304 agccttgg 311
           | ||||||
Sbjct: 504 acccttgg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no212_o18.g1 MSMg01no212_o18.g1 CHROMAT_FILE:
MSMg01no212_o18.g1 PHD_FILE: MSMg01no212_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:49 2005
         (278 letters)



>mm_chr5_24410292_24410969
          Length = 678

 Score =  522 bits (270), Expect = e-153
 Identities = 276/278 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggtatgatgagcgcaaagccgtgagaccagaacatctccagggccatcgctttatgg 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agtggtctgatgagcgcaaagccgtgagaccagaacatctccagggccatcgctttatgg 419

                                                                       
Query: 61  gtttaaactctggggcctgtcacatcattttcctgtttgtgtttatctatcctaattgcc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gtttaagctctggggcctgtcacatcattttcctgtttgtgtttatctatcctaattgcc 359

                                                                       
Query: 121 ttgaatttatttcttggccaggtgtgaacctggacatactctcgactgctataaagatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttgaatttatttcttggccaggtgtgaacctggacatactctcgactgctataaagatca 299

                                                                       
Query: 181 tccccctgcagttgcatgccccgcagttcagcctgccagaacccctactattcaccagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tccccctgcagttgcatgccccgcagttcagcctgccagaacccctactattcaccagct 239

                                                 
Query: 241 tggatgctctcgtaggcttgaggtccattcctggctcc 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tggatgctctcgtaggcttgaggtccattcctggctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)