Query= MSMg01no213_a04.b1 MSMg01no213_a04.b1 CHROMAT_FILE:
MSMg01no213_a04.b1 PHD_FILE: MSMg01no213_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:56 2005
(376 letters)
>mm_chr5_90036986_90037760
Length = 775
Score = 694 bits (359), Expect = 0.0
Identities = 368/371 (99%), Gaps = 1/371 (0%)
Strand = Plus / Plus
Query: 6 aataaaagcgcctatatttntggggggaaagtggttgtgatcttaaatcaggaaatacag 65
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aataaaagcgcctatattt-tggggggaaagtggttgtgatcttaaatcaggaaatacag 264
Query: 66 tgatagagatgagtcaaaatgaaagtataaaagtgttctaaagcaaatgttctaaaaatt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgatagagatgagtcaaaatgaaagtataaaagtgttctaaagcaaatgttctaaaaatt 324
Query: 126 aaaactatttttaaaatgaagtttagtctttgacaatctcacacattatggaactgctta 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaactatttttaaaatgaagtttagtctttgacaatctcacacattatggaactgctta 384
Query: 186 ctctgtcttccctcattcccttatctgccttctacccccatcagtgccatgccaacctcc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctgtcttccctcattcccttatctgccttctacccccatcagtgccatgccaacctcc 444
Query: 246 ctacctatgggtaaaatggtggtccacatctggtctaccacaggccacttatggaggcag 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctacctatgggtaaaatggtggtccacatctggtctaccacaggccacttatggaggcag 504
Query: 306 atacaggaagtttggctgttcttaccccacaccacctccaggcaggcaacaggctgtgag 365
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atacaggaagtttggctgcacttaccccacaccacctccaggcaggcaacaggctgtgag 564
Query: 366 aagctttagga 376
|||||||||||
Sbjct: 565 aagctttagga 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 775
Length adjustment: 9
Effective length of query: 367
Effective length of database: 766
Effective search space: 281122
Effective search space used: 281122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no213_a04.g1 MSMg01no213_a04.g1 CHROMAT_FILE:
MSMg01no213_a04.g1 PHD_FILE: MSMg01no213_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:56 2005
(304 letters)
>mm_chr5_90056911_90057614
Length = 704
Score = 526 bits (272), Expect = e-154
Identities = 296/304 (97%)
Strand = Plus / Minus
Query: 1 aaagagtaagggtttaaggatcccagagagttaaagtggtttggaatgatctctctaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaagagtaagggtttaaggatcccagagagttaaagtggtttggaatgatctctctaaaa 445
Query: 61 caagggtacagaaatacctgctttttatgaatcactgaagatatttgattatggaaatca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taagggtacagaaatacctgctttttatgaatcactgaagatatttgattatggaaatca 385
Query: 121 ataatgaattagaatatttctctgtaaatataccatcaattgacattaagtggttttgcc 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 384 ataatgaattagaatatttctctgtaaatataccatcaatcgacattaagtggctttgcc 325
Query: 181 cctaaactcactaagctccctcatcaattcatcaccactgtacaagtcaaacttgcatat 240
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 324 cctaaactcactaagctccctcatcaattcatcagcacggtacaagtcaaacttgcatat 265
Query: 241 attatggttttcagacaaatttgaaaagatatagaatactttctctcatttgatattttc 300
||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||
Sbjct: 264 attatggttttcagacaaatttggaaaggtatagaatactttctatcatttgatattttc 205
Query: 301 tata 304
||||
Sbjct: 204 tata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space: 205025
Effective search space used: 205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
