Query= MSMg01no213_d01.b1 MSMg01no213_d01.b1 CHROMAT_FILE:
MSMg01no213_d01.b1 PHD_FILE: MSMg01no213_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:09 2005
(593 letters)
>mm_chr5_84850366_84851358
Length = 993
Score = 818 bits (423), Expect = 0.0
Identities = 459/475 (96%), Gaps = 8/475 (1%)
Strand = Plus / Minus
Query: 6 aattcctttcataatagtgtgaaggctctattctattcttaaaagccaaagaaaggaaaa 65
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aattcctttaataacagtgtgaaggctctattctattcttaaaagccaaagaaaggaaaa 412
Query: 66 gtattctagtgataatgatatatgtatttagtaaattcagtttctagggtaacgttttga 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gtattctagtgataatgatatatgtatttagtaaattcagtttctagggtaacgttttga 352
Query: 126 atttttgttaaaaatgaaattatatttcagaacctttactcaattatttcacatttattt 185
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 351 atttttgttaaaaatgaaattatatttcggaacctttactcaattatttcacatttattt 292
Query: 186 cttttgtgtttctattgatggtcatgtgtggtgtcagtgtgtatacatatgtcgtgaggg 245
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 291 cttttgtgtttctattgatggtcatgtgtggtgtcagtgcgtatacatatgccgtgaggg 232
Query: 246 tgcctacagatccagcagtgggcaccagccacctgttgtgggtgctgggaaccaaatctt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tgcctacagatccagcagtgggcaccagccacctgttgtgggtgctgggaaccaaatctt 172
Query: 306 ctggaataacagtgagtacttcttacaactaagccatctcctgagtcttgtctactaatt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ctggaataacagtgagtacttcttacaactaagccatctcctgagtcttgtctactaatt 112
Query: 366 ttataaaatgcaa----accctcactggattttaaagtgctagctgataaccaacaatct 421
||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct: 111 ttataaaatgcgatttt----tcactggattttaaagtgctagctgataaccaacaacct 56
Query: 422 gtaaataaaatataggtcccattaaatcttagaaatatggatcattaatagagag 476
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 55 gtaaataaaatataggtcccattaaatcttagaaatgtggatcattaatagagag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no213_d01.g1 MSMg01no213_d01.g1 CHROMAT_FILE:
MSMg01no213_d01.g1 PHD_FILE: MSMg01no213_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:09 2005
(293 letters)
>mm_chr5_84735555_84736245
Length = 691
Score = 543 bits (281), Expect = e-159
Identities = 290/293 (98%), Gaps = 2/293 (0%)
Strand = Plus / Plus
Query: 1 tcagaagtgactctcagaagtgaaaacacaggtttgagcaatacagattaagcattttta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tcagaagtgactctcagaagtgaaaacacaggtttgagcaatacagattaag-attttta 259
Query: 61 aactatttaaagatttaattatctatattgatgtttacaaagcatatagaagggtttaca 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 260 aactatttaaagatttaattatctatattgatgtttacaaggcatatagaagggtttaca 319
Query: 121 ttttattaaacctgataacgcagaacagcttacttctcaagacaaaggaggatcagaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttttattaaacctgataacgcagaacagcttacttctcaagacaaaggaggatcagaatt 379
Query: 181 gaattttttatttttacaaaatttgatgattatttatgattaaataatcttaccaagtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaattttttatttttacaaaatttgatgattatttatgattaaataatcttaccaagtat 439
Query: 241 gtaaggaatctacaaaacaataaaacccatatactgaaggctcgctggtaata 293
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 440 gtaaggaatctacaaaacaataaaacc-atatactgaaggctcgctggtaata 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 691
Length adjustment: 9
Effective length of query: 284
Effective length of database: 682
Effective search space: 193688
Effective search space used: 193688
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
