BAC Information

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BAC

Clone NameMSMg01-213I19
Chromosome5 (Build37)
Map Location 54,421,878 - 54,422,188
singlet/doubletsinglet
Overlap geneStim2
Upstream geneSlc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213I19.T7 (MSMg01no213_i19.b1)MSMg01-213I19.TJ (MSMg01no213_i19.g1)
ACCAG394505AG394506
length725993
length of high quality
(start - end)
319 (37 - 355)---
definitionCHROMAT_FILE: MSMg01no213_i19.b1 PHD_FILE: MSMg01no213_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:36 2005CHROMAT_FILE: MSMg01no213_i19.g1 PHD_FILE: MSMg01no213_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCGC
CTCACGGAATACTGTGATTAAGTTAGAAGCACTGATTTGGAAGTAATGAG
ATTCTGAGAGCTGGAATGGGGATTATGCACTCTGTGATGTTGTGTACATC
AAACATGTACCACCTGAGGTGAACTTTGCGGCTTTGATGTGAACACAGTC
CCAAAGGGTTTGTACGTTCAAAGTTTGTTCCTCAGTGTGACAGTATGAGA
ACTGATGGCACCTCCAAGAGACAGAGCCTAGTGTAAGATATCACTGGCAA
TTCAGCTCTAGGAATGGATTAACACTGTTCTGTAATTCCAGGTATTCCTT
ATTCTTTTTTTTACCCCCCCCCCCGCCCCTCCATGCTGTCTTCCTGCCTC
ACCTCATGATCCCCCCTACATGTACTATCATGAAGCCATCACCATGAAGT
GCTCATGAGAGATGAAACAGTATCAGCAGCAGAACCTTAAACTTAACAGA
AAAATGGACTAATGTACTTGCTTTTCATGAAGACTGTAATGGCTTCTTGA
CATATAAGCCAGAAGTAGAAGATTCTCAAGACTAAACCCTACTCTGCCAC
CAGTTTTGAATATTACAAAGTTTCAGTTCCCAGATAGTATTCAACGTACA
ACCCTGTAAGAGGCATGCCTTTTGCATGAACAGAAAACTGGTGAATATGT
GTGGAAATTGGTGCTCAAAGTACAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXNNNTANNACTGGCTCCCNNCCNNATGCNT
GGTCCTCNTANACTCNNNCGTGTGCTCCTTGNTNATNTGCNAATTNCNTC
TTTTNACNNAGGCCTTGTNNNNNTTCTTTTCCTTTTCCTTCTTTNTTTAC
CTTNTTTGANACTCNNNTACNNNACCCNTGTCCTCCNNNNATNNNNANAC
CTTGTNTTTNANNNNNNNCTNNANNCTTGATTTTGTTCTTNCTTTTNANC
CNNNNTNTTCCNCTTANTTTGTTCTTCTGGTTNNNCCCTTNTNTTTTTTN
TTATATTTTTTTTTTTNTTTTTTTTCCTTGTTTNCCCCCTCTTTNNNNNN
NNNNTTNTTTCTTTTTTTTTTTTNCNCCCCCCCTCCCCCCTCTTTTTNNT
TCCTTGTTTTATTTTTTTTTTTTTTCCCCCCCTTTTTTTTTTTCCCCCAG
TGCCNAAAAGAAGAGGGGGAGGAGTTTNTTTTCTTNTTTNNTNNTTTNNN
NNNTTCTTCCTCTTTTTNCTCCCCTTATCTATGTGGGAGGGGAGAGGAGG
TCCCTTTTTNNNNNNTCNTTNNNNNNNNNTCTTTTTCCTTTTTTTTTCTC
TTCGTTTTTTTTTTGGGATGAGGGGAGGNAGAAATCCTCGCCCTTCTTGN
NNNNNTNNTNNTTTTTGTGNNNNTTTTCTTTNTTTTCTTTTTCTCCCCCC
TCCNNCCTTTCTCTCCTATATCTCGTGTGGTAGGAGGGAGGAGGGTTTTA
CTCTCNCCCTCTCCTCCTCTTCTTCTCTCTTTTAGGGAGGAGGAGAGAGG
GGGGGTGTCTTATTNNNTNNNCTCTNNCTTNTNNTTTTCTTTTTNCTCTT
NTTTNTNTNTTTCTTTTTTTTTTTTNTTTTTCTTCTTTCTTCTCCCCTTC
TCTTNTTCTCGTGTCTCGCTTCTATGTTACGGTGGGGGACGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_i19.b1 MSMg01no213_i19.b1 CHROMAT_FILE:
MSMg01no213_i19.b1 PHD_FILE: MSMg01no213_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:36 2005
         (319 letters)



>mm_chr5_54421674_54422392
          Length = 719

 Score =  516 bits (267), Expect = e-151
 Identities = 300/311 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcgcctcacggaatactgtgattaagttagaagcactgatttggaagtaatgag 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 515 gaattctcgcctcacggaatactgtgattaggttagaagcactgatttggaagtaatgag 456

                                                                       
Query: 65  attctgagagctggaatggggattatgcactctgtgatgttgtgtacatcaaacatgtac 124
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 455 attctgagagctagaatggggattatgcactctgtgatgttgtgtacatcaaacacctac 396

                                                                       
Query: 125 cacctgaggtgaactttgcggctttgatgtgaacacagtcccaaagggtttgtacgttca 184
           ||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 395 cacctgacgtgaactctacggctttgatgagaacacagtcccaaagggtttgtacgttca 336

                                                                       
Query: 185 aagtttgttcctcagtgtgacagtatgagaactgatggcacctccaagagacagagccta 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aagtctgttcctcagtgtgacagtatgagaactgatggcacctccaagagacagagccta 276

                                                                       
Query: 245 gtgtaagatatcactggcaattcagctctaggaatggattaacactgttctgtaattcca 304
           ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 275 gtggaagatatcactggcaattcagctctaggaagggattaacactgttctgtaattcca 216

                      
Query: 305 ggtattcctta 315
           |||||||||||
Sbjct: 215 ggtattcctta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)