BAC Information

Click to search

BAC

Clone NameMSMg01-213L18
Chromosome5 (Build37)
Map Location 13,476,248 - 13,476,416
singlet/doubletsinglet
Overlap geneSema3a
Upstream geneSema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213L18.T7 (MSMg01no213_l18.b1)MSMg01-213L18.TJ (MSMg01no213_l18.g1)
ACCAG394631AG394632
length722716
length of high quality
(start - end)
320 (39 - 358)173 (139 - 311)
definitionCHROMAT_FILE: MSMg01no213_l18.b1 PHD_FILE: MSMg01no213_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:50 2005CHROMAT_FILE: MSMg01no213_l18.g1 PHD_FILE: MSMg01no213_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TGATGCAATGGGGTGGGAGAGCCATTAAGCCTCAAAACGACACAAGAGAA
GAGTTCCGAACTTGGTTCCCTCCTTGAGCTAGACCTAGCTTGGAGTTATC
TGAGAGCCTGTCAGTTGGGTTTGCCTGATCAGACTAGTTGATGGACATAT
CTCTGAGGCATTTTCATGATTGATGGCTGACGGAGGAGGGCTCAGCTCAC
TGTGGGCAATGCTGTTATAGTCGGAGCTCCTGCGTGGGACAAGGTAACTG
GTTTAGCAAAAGCAAGATGCTACCCATTGGGAAAATTTCTCCCATATCTT
CAGCTTCTTTTCTCTGCCGCCCCCCTTCCCTTAATGATAGACTGTAAATT
GCCATCTGAAGTACACCTTTTCTCTTCTCTCAACCCTCAGAAAAAAATGT
TACTCTTGACTTGGTTCTTAGGCTGACTGCCCTGTATTTCTAACATATCT
ATGTTTTTATGTTTTTTAAAATAATATTTTGGTGTATGCGTTTCTAGATT
TCTTTTGACACAGATCAATTGGGATGATAATGTTGCAGATTCGTTCCCAA
CCCATGGAATGATGATGTTGGTTTTAATACTGTTTTTCTAAGCAAAATCT
TTTACATCATCAGAATGTGCAGCATTCTGAACTTCAGAGACAGACAGCCC
ANACACCTCCTACCAGATTCAG
GTGGGAGGCCTGGCGGCCGCCTGGCCTGCCCAAGGGGGNGAACNANAGAA
GGATTGCCAAAAAAAAGGACNNNGGNANCNANNNANGCNAAAANNCNAGG
CANCGGCATTTATCCCAAAAAATTTTTCCGANGAAGAAGGCCCCACTGCC
CTCCTATAATTGAGCTTCCTGTTGTTAATCCGTTCTATCTTTCAAGTAAA
CTAAGCTTTGCTGCTCTTAGGGTGGGCTCGTGGGGAGTGAAGGTTTACAG
GCCATTGCTCAGGCTCCCCTCCACTGAAATGGTAAATAAACCTAGCTTCC
TACGTGATCTTTTTTTTTTCANACNGNGGNACAAGNANNNNNNCCCAAGA
ATTTTTTTTTTTCCCAAACGNNACCCCAAGAAGCCCAGNGANTTTGATTT
GCATGACCCCCATAAATTNTCAATCAAATTCCGGAGGGGGAGGGCAGAGG
TAATATGGTTATGCAATTACCTGGGGAATTTGGAGCAGTCTAGACAGGCA
ATCTAGGAAATTCTGGAAAAGATATTATCAGGAGAGCTTGCCTAGACTAC
ATCAAATTTAATTTTCAATGCTTAAGCTGCCTTCTGAGACAATCTGCTTT
AAATTGATCTATACTATTACTTAAAATGCTACCCTTGGTTTTATTTTTTT
TTGCTGNTNATGAAGTTGAGAAAAAGAGACAATGCGCACTTTATACTGCT
AGAAAAAATGACCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_l18.g1 MSMg01no213_l18.g1 CHROMAT_FILE:
MSMg01no213_l18.g1 PHD_FILE: MSMg01no213_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:51 2005
         (173 letters)



>mm_chr5_13476048_13476620
          Length = 573

 Score =  288 bits (149), Expect = 1e-82
 Identities = 164/169 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggccccactgccctcctataattgagcttcctgttgttaatccgttctatctttcaagta 60
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ggccccgctgccctcctataattgagcttcctgttgttaatccgtgctatctttcaagta 260

                                                                       
Query: 61  aactaagctttgctgctcttagggtgggctcgtggggagtgaaggtttacaggccattgc 120
           |||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||
Sbjct: 261 aactaagctttgctgctcttagggtgggcttgtggggagtgaagggctacaggccattgc 320

                                                            
Query: 121 tcaggctcccctccactgaaatggtaaataaacctagcttcctacgtga 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggctcccctccactgaaatggtaaataaacctagcttcctacgtga 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)