BAC Information

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BAC

Clone NameMSMg01-213L23
Chromosome5 (Build37)
Map Location 116,248,318 - 116,248,635
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64
Downstream geneLOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213L23.T7 (MSMg01no213_l23.b1)MSMg01-213L23.TJ (MSMg01no213_l23.g1)
ACCAG394639AG394640
length721718
length of high quality
(start - end)
330 (31 - 360)237 (123 - 359)
definitionCHROMAT_FILE: MSMg01no213_l23.b1 PHD_FILE: MSMg01no213_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:51 2005CHROMAT_FILE: MSMg01no213_l23.g1 PHD_FILE: MSMg01no213_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGCGGAATTC
TTTTAATAATTCCCTTATTTACTTTTAAAGATTTCTCTGGTTTTACTTTT
ATGGGTATATGTGATTGTCCGCATTCATGGATATGTGTCACGTGTGTGCC
AGGTGCTCTTAGTGGCCAGGGAGTCAGAGCTATACGAGGTTGTGAGTCAC
CCATGTTGGTGATTGGATTTGAACTTGGGTCTCAGGAGAAGCAGTACTCA
CTTTTAACCACTGAGCATCTCTCTAACCATCAGTCCAGTGGAGTATGATA
CCTACTTCCTTGATTATTTTTTAGGTCTTTAAAAAAAAAGTGCCTTGGTC
ATATTTTTCTTTTGGTATAGCCAGAGCAAGAGAAATGAATAGATATTGAA
AAGAAAGTGAATTGATCCCACTGGTTTTGCAGATGGACCAAAGAACCATG
AAGAAGCTGGGTGAAGGTAGTGGCAAGAAAGAAGTTTTAGAGGGCCAGGC
AGTGGTGGCACACACCTTTAATCCAAGCACAGAGGCAGGTGAATTTCTGA
ATTCGAGACCAGCATCGTCTACAAAGTGAGTTCCAGGACAGTCAGGGCTA
CACAGAGAAACCCTGTCTCGAAAAAACAAACAAACAAACAAACAAACAAA
CTAATAAACAAACTAAACATAACAGAAGTTTTAGAGGAGAAACAGATCGT
TACTTACCTTTTGCTTTCAGC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTAAGCGTCTGTATTTTGTTGTTGTTTTGT
TTTAAACACTAGCACTGCCCCTTACGGGGAAAGATTAGGAGTGGGCAGTA
TCCCCAACAGGTGCTTGGCTGGAAAGCACTGGAGGGCAGGAAGAAGCAGG
GACAAAGAGGCTGGGGGTGGAGCTCAGCTCGAAAAGCGTCTGCCTAGCAT
CTGCGAAGCCATGGGTTCGAGTCTCAGCACCACATTAAAACAGGACTCAG
GAGGTACAGGTGGGATCAGAAGTATATGGTTATCCTCGGCTACTCGAGAG
AGTCAGGATTTTTTTCTCTGGGACACTCGAGAACTTGTCTGGAAAAAGTA
AAAAACCACAGGGATGGCCCCCCCCCTGCAGACCTGCATGGAGGATGGCG
GTGGCAGCGACAGCTCTCGGGGACGGGCAGGTGGGCTTCCGCTCCAACTG
GAAAAAAACGTGGGGCTGGCTCCGCGCTGCGTCCGGGAAACTGAGGTAGA
TGGAGCATAATCGCTGGCGAGCAGGGTGTATACGCCCCACGGATCCCAAT
CTGGAACCGCTACCCTGTTTGTCAGGGGGTCGGTTTTCCGGCATCGTGTC
GCCCGTCGCATTACTTCTTCCCCAGTGTTTGACCTCCAGGCTTTCGTTCT
GCCGCCTGTTCGTTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_l23.b1 MSMg01no213_l23.b1 CHROMAT_FILE:
MSMg01no213_l23.b1 PHD_FILE: MSMg01no213_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:51 2005
         (330 letters)



>mm_chr5_116248296_116249026
          Length = 731

 Score =  549 bits (284), Expect = e-161
 Identities = 309/322 (95%), Gaps = 10/322 (3%)
 Strand = Plus / Minus

                                                                       
Query: 14  ggaattcttttaat-----aattcccttatttacttttaaagatttctctggttttactt 68
           ||||||||||||||     |||    ||||||||||||||||||||||||||||||||||
Sbjct: 340 ggaattcttttaataaaacaat----ttatttacttttaaagatttctctggttttactt 285

                                                                       
Query: 69  ttatgggtatatgtgattgtccgcattcatggatatgtgtcacgtgtgtgccaggtgctc 128
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttatgggtatatgtgagtgtctgcattcatggatatgtgtcacgtgtgtgccaggtgctc 225

                                                                       
Query: 129 ttagtggccagggagtcagagctatacgaggttgtgagtcacccatgttggtgattggat 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ttagtggccagggagtcagagctatacgaggttgtgagtcacccatgttggtgattggat 165

                                                                       
Query: 189 ttgaacttgggtctcaggagaagcagtactcacttttaaccactgagcatctctctaacc 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ttgaacttgggtctcaggagaagcagtactcacttttaaccactgagcatctctctaacc 105

                                                                       
Query: 249 atcagtccagtggagtatgatacctacttccttgattattttttaggtcttt-aaaaaaa 307
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 104 atcagtccagtggagtgtgatacctacttccttgattattttttaggtctttaaaaaaaa 45

                                 
Query: 308 aagtgccttggtcatatttttc 329
           ||||||||||||||||||||||
Sbjct: 44  aagtgccttggtcatatttttc 23


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 731
Length adjustment: 9
Effective length of query: 321
Effective length of database: 722
Effective search space:   231762
Effective search space used:   231762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)