Query= MSMg01no214_m07.b1 MSMg01no214_m07.b1 CHROMAT_FILE:
MSMg01no214_m07.b1 PHD_FILE: MSMg01no214_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:12 2005
(638 letters)
>mm_chr5_127877058_127878095
Length = 1038
Score = 1027 bits (531), Expect = 0.0
Identities = 620/695 (89%), Gaps = 72/695 (10%)
Strand = Plus / Minus
Query: 16 cattttggcctatagagcaagttccaggccaaccagggatacacaat------------- 62
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 cattttggcctatagagcaagttccaggccaaccagggatacacaatgacacacacacac 979
Query: 63 -----cacacacacacacacacacacacacacacaca--gagagagagagag--agagag 113
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 978 acacacacacacacacacacacacacacacacacacagtgagagagagagagaaagagag 919
Query: 114 agagagagagagagagagagagag------------------------------------ 137
||||||||||||||||||||||||
Sbjct: 918 agagagagagagagagagagagagggagagagagggagggagagagagggagagacagag 859
Query: 138 --------------agagagccagagatgaatagaactcagcgatgccatctacttcaca 183
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 acagagacagagacagagagccagagatgaatagaactcagcgatgccatctacttcaca 799
Query: 184 ctaatccagcatgcctgagctcctatgcactttaactttacagttggagaagccagtttt 243
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 798 ctaatccagcatgcctgagctcctatgcgctttaactttacagttggagaagccagtttt 739
Query: 244 tctttccgcttccattatctgatttaagtttctccacccatcagggaaatagccctagct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tctttccgcttccattatctgatttaagtttctccacccatcagggaaatagccctagct 679
Query: 304 cccatacccccaagcaagacagttctgaactcaatgttgaatcaggactcggtcacctct 363
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 678 cccatacccccaagcaagacagttctgaattcaatgttgaatcaggactcggtcacctct 619
Query: 364 aaagttctgaagttccaacaggatctggccgccatctgggactgcacatgctcctttctt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaagttctgaagttccaacaggatctggccgccatctgggactgcacatgctcctttctt 559
Query: 424 gggagtccttggtcttatttttagcactcgctagcgacattcagacgggctgataacgct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gggagtccttggtcttatttttagcactcgctagcgacattcagacgggctgataacgct 499
Query: 484 tcctgttcatgttaagagagacttcaccaccacctaacaacctggatttcctattgtttc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcctgttcatgttaagagagacttcaccaccacctaacaacctggatttcctattgtttc 439
Query: 544 tatttcagccaatgacatcactgccatccatgccggggacactaatgtcctcctttgtgc 603
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 438 tatttcagccaatgacatcactgccatccatgccgggaacactaatgtcctcctttgtgc 379
Query: 604 ggtcacccaagctagaccagtggttctcaacctgt 638
|||||||||||||||||||||||||||||||||||
Sbjct: 378 ggtcacccaagctagaccagtggttctcaacctgt 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no214_m07.g1 MSMg01no214_m07.g1 CHROMAT_FILE:
MSMg01no214_m07.g1 PHD_FILE: MSMg01no214_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:12 2005
(564 letters)
>mm_chr5_127855571_127856529
Length = 959
Score = 1033 bits (534), Expect = 0.0
Identities = 555/564 (98%), Gaps = 5/564 (0%)
Strand = Plus / Plus
Query: 1 ccttgctctggcagaaaagggcagtgatgaagatggatgccaggatgaaaggggccttga 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttgctctggcagaaaaggg-agtgatgaagatggatgccaggatgaaaggggccttga 259
Query: 61 gcctctgcactttccagcatctcttgtgcaggacaagcagattcagaagcaactaaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcctctgcactttccagcatctcttgtgcaggacaagcagattcagaagcaactaaaagg 319
Query: 121 ggaacgctgtcattgtgatcagcatagaggagacatgctgtggtctgcctgagaagtctt 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggaacgctgtcattctgatcagcatagaggagacatgctgtggtctgcctgagaagtctt 379
Query: 181 ctctgcctcaaaccgtgcccattgcccttgaagagcatgtctcttcagcttccaccaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctctgcctcaaaccgtgcccattgcccttgaagagcatgtctcttcagcttccaccaaca 439
Query: 241 gcttaagcagggggcttgcaagggtcaccctcctcaaactagctgctcacactgctgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcttaagcagggggcttgcaagggtcaccctcctcaaactagctgctcacactgctgctg 499
Query: 301 cagccagtttccatgtcacccacccaagccagcttgtgtgtcaccttgaatattactcag 360
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 500 cagccagtttccatgtcaccca----agccagcttgtgtgtcaccttgaataatactcag 555
Query: 361 cctgtttaggcacactcattcctcttctagccttgtatctggccagatggtgattcagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cctgtttaggcacactcattcctcttctagccttgtatctggccagatggtgattcagaa 615
Query: 421 agagatggtggtatctctgctgaaagctagttgcttcctggcctgtaggctgctgctgct 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agagacggtggtatctctgctgaaagctagttgcttcctggcctgtaggctgctgctgct 675
Query: 481 gggataacacgaatgcttctaggaacagggatgcggctcctcccacagaagggaaaggga 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 676 gggataacacgaatgcttctaggaacagggatgcggatcctcccacagaagggaaaggga 735
Query: 541 gaggcaaaccaaccaagatgccca 564
||||||||||||||||||||||||
Sbjct: 736 gaggcaaaccaaccaagatgccca 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 959
Length adjustment: 10
Effective length of query: 554
Effective length of database: 949
Effective search space: 525746
Effective search space used: 525746
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
