BAC Information

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BAC

Clone NameMSMg01-214O19
Chromosome5 (Build37)
Map Location 17,277,574 - 17,277,868
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c
Downstream geneCd36, Gnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214O19.T7 (MSMg01no214_o19.b1)MSMg01-214O19.TJ (MSMg01no214_o19.g1)
ACCAG395369AG395370
length718716
length of high quality
(start - end)
595 (45 - 639)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no214_o19.b1 PHD_FILE: MSMg01no214_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:24 2005CHROMAT_FILE: MSMg01no214_o19.g1 PHD_FILE: MSMg01no214_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGATGACCACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGTAAACGCAAATCAAAACAACACTGAGATTC
CACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAG
ATGCTGGCAAGGATGTGGAGAAAGGGGAGCACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCTGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGTCCCAACGGGTAAGAAGAACACATGCTCAACTATGT
TCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACACAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGA
ATACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAATG
GATGGACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAAAGGA
ACTCGCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTA
GGATACCCAAGATATAAGATACAACTTGCCNAACGCATGAAATTCAAGAA
GAACGAAGACCAAAGTGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACGGAGTTACAGCAAGAACTTTAAGG
AACATTTGATGGTGAGATTCCCCTCCAGCTTTGTAGTCAAGAAAAGAGAC
ATCTTATATAAATGAAAATCATGAAGTCACTATTGGAACTGTATGTGTGA
TATGCCAATGGAATTTTTAAATAGGGAGCCAACTAACATTTCAGACACTA
AGTAATTTGTAGAGACCTTTTTATATCCTAGCCATATTAAAATCATACAC
AAGTTAAATAATCAGAAACTATATTTTTTACCAGGTTCTTCATGAGAAAA
ACATCCCTAATTCCTATTTAGGCACGCTAAAGCACATTTTTCAATAGTGA
TAAATATTCAGCATGTATATGTCTATTTTCATTCTTGATTCCCATGGAGC
TCAACAAAAATTAAATTATCTGCTTTAATGGCTAAAAGTGAGAATATGTG
AAATCAGTTTCCATAACTCTTCTCTCTCCCAGGTTTATAGACCCATCTTT
CCAAAAACACCTTAGGCCTCAGCTATTAGGAATGAAGATAAGATTAGGGC
AGAAATACCTTTAACTTGGTACCTTGATCCATCATTCATTTAAGCTCCTT
TGTGCCTGCCACTCAGCACATTAGAGCTCATGTTGTTGCACAGCAAAACA
CATCAGGCAACAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_o19.g1 MSMg01no214_o19.g1 CHROMAT_FILE:
MSMg01no214_o19.g1 PHD_FILE: MSMg01no214_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:24 2005
         (292 letters)



>mm_chr5_17277374_17278068
          Length = 695

 Score =  505 bits (261), Expect = e-147
 Identities = 286/295 (96%), Gaps = 3/295 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacggagttacagcaagaactttaaggaacatttgatggtgagattcccctccagctttg 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||
Sbjct: 201 cacggagttacagcaagaactttaaggaacatttgatggtgagatttccctgtagctttg 260

                                                                       
Query: 61  tagtcaagaaaagagacatcttatataaatgaaaatcatgaagtcactattggaactgta 120
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tagtcaaaaaaagagacatcttatataaatgaaaatcatgaagtcactattggaactgga 320

                                                                       
Query: 121 tgtgtgatatgccaatggaatttttaaa-tagggagccaactaacatttcagacactaag 179
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtgatatgccaatggaattttgaaaatagggagccaactaacatttcagacactaag 380

                                                                       
Query: 180 taatttgtagagacctttttatatcctagccatattaaaatcatacacaagttaaataat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatttgtagagacctttttatatcctagccatattaaaatcatacacaagttaaataat 440

                                                                  
Query: 240 cagaaactatatt--ttttaccaggttcttcatgagaaaaacatccctaattcct 292
           |||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaaactatattatttttaccaggttcttcatgagaaaaacatccctaattcct 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 695
Length adjustment: 9
Effective length of query: 283
Effective length of database: 686
Effective search space:   194138
Effective search space used:   194138
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)