Query= MSMg01no215_d14.b1 MSMg01no215_d14.b1 CHROMAT_FILE:
MSMg01no215_d14.b1 PHD_FILE: MSMg01no215_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:49 2005
(692 letters)
>mm_chr5_56905691_56906786
Length = 1096
Score = 1257 bits (650), Expect = 0.0
Identities = 680/692 (98%), Gaps = 4/692 (0%)
Strand = Plus / Minus
Query: 5 gaattccttattattatacaagtttgcaggtatgtttaagtagaaagcaaacttttttta 64
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 896 gaattccttattattagataagtttgcaggtatgtttaagtagaaagcaaactttttcta 837
Query: 65 tcatacaaatatggcatcttatttaaaaattatgtcaaacttactctctccacactgcaa 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tcatacaaatatggcatattatttaaaaattatgtcaaacttactctctccacactgcaa 777
Query: 125 gtggagtaacaaacctggagagtacatcacagattgttgaatatgttaatctgactcttg 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gtggagtaacaaacctagagagtacatcacagattgttgaatatgttaatctgactcttg 717
Query: 185 aaatctgctgctcattt----aaaaaaaaaaaagatccctttgaaaataatgttgctcac 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aaatctgctgctcatttaaaaaaaaaaaaaaaagatccctttgaaaataatgttgctcac 657
Query: 241 tgacaatgtactattcaacaactccagtagagactactaagagattagtgttttcttgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tgacaatgtactattcaacaactccagtagagactactaagagattagtgttttcttgtc 597
Query: 301 taccagcacacctaccattctgcatcccattgatcagaagttgattttaattaaagtctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 taccagcacacctaccattctgcatcccattgatcagaagttgattttaattaaagtctt 537
Query: 361 attatcctattttgtattttgacaaaaatacaataacactaccctaaagctaaattttat 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 attattctattttgtattttgacaaaaatacaataacactaccctaaagctaaattttat 477
Query: 421 aactagagctgccaatagcaatgatgcctacaatggatcaagaccatgggaaatctgaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aactagagctgccaatagcaatgatgcctacaatggatcaagaccatgggaaatctgaac 417
Query: 481 ttccaataaactatttaccattcacataaccattaaaacatttatcattcgttagagaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttccaataaactatttaccattcacataaccattaaaacatttatcattcgttagagaag 357
Query: 541 tatatgtagattagtttcagttttggagaacttgattcccacccttactcatgacgtagc 600
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 356 tatatgtagattagtttcagttttggagaacttgattcccatccttactcatgacgtagt 297
Query: 601 aaaatccaagatttcagtgtacaaagcaactgcacatgttgtgcaaatagaaagtgaagt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaaatccaagatttcagtgtacaaagcaactgcacatgttgtgcaaatagaaagtgaagt 237
Query: 661 acagttggaaacagcatctgcagatgtacctg 692
||||||||||||||||||||||||||||||||
Sbjct: 236 acagttggaaacagcatctgcagatgtacctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1096
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1086
Effective search space: 740652
Effective search space used: 740652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no215_d14.g1 MSMg01no215_d14.g1 CHROMAT_FILE:
MSMg01no215_d14.g1 PHD_FILE: MSMg01no215_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:49 2005
(643 letters)
>mm_chr5_56858286_56859328
Length = 1043
Score = 1185 bits (613), Expect = 0.0
Identities = 638/652 (97%), Gaps = 9/652 (1%)
Strand = Plus / Plus
Query: 1 catattaattcctttatgctcagggaacattatggtagnactgtatgtataaaagatgtt 60
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 192 catattaattcctttatgctcagggaacattatggtagaaatgtatgtataaaagatgtt 251
Query: 61 aaacatcaagacagggatagtgatgtagtttgttgattttgtggtaccacatgttgttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaacatcaagacagggatagtgatgtagtttgttgattttgtggtaccacatgttgttaa 311
Query: 121 attcatatacttataggaatgatgatgacctagactacatcttactgagttggcaccccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 attcatatacttataggaatgatgatgacctagactacatcttactgagttggcaccccg 371
Query: 181 atcagctcatgagagtcctgaaagctttatgtgcaggtaatctttgatgggaatgaaaga 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 372 atcagctcatgagagtcctgaaagctttatgtgcagataatctttgatgggaatgaaaga 431
Query: 241 taaaattcttccatagtgtagtgactctttaagtgacccttcttctgtcatcaccagcat 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taaaattcttcaatagtgtagtgactctttaagtgacccttcttctgtcatcaccagcat 491
Query: 301 ctcacctctgccaa---------acacatagtgtcatagaaaaaattgtgaagacatgtg 351
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctcacctctgccaacctaacaaaacacatagtgtcatagaaaaaattgtgaagacatgtg 551
Query: 352 tgtgtatatgtgtgtgggggagaatttgttgaaaaaaggaagtcaagaaatggatagaaa 411
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgtgtgtatgtgtgtgggggagaatttgttgaaaaaaggaagtcaagaaatggatagaaa 611
Query: 412 acaatataagacagctgaatatggtcctattacattatgcataaaaggaaaacattataa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acaatataagacagctgaatatggtcctattacattatgcataaaaggaaaacattataa 671
Query: 472 tggaaattattatgtgattgttttagattatgatttcagaatatagtgaacaccacaatt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tggaaattattatgtgattgttttagattatgatttcagaatatagtgaacaccacaatt 731
Query: 532 aataataaaaatcaaggcttccttggcaagcatccattaaaaatcaatggtaacttatat 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aataataaaaatcaaggcttccttggcaagcatccattaaaaatcaatggtaacttatat 791
Query: 592 tttcttaatgatggtctgactcacatttcagatctttcagatctttttgtca 643
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tttcttaatgatggtctgactcacatttcagatctttcagatctttttgtca 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
