Query= MSMg01no215_k24.b1 MSMg01no215_k24.b1 CHROMAT_FILE:
MSMg01no215_k24.b1 PHD_FILE: MSMg01no215_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:25 2005
(555 letters)
>mm_chr5_18957448_18958405
Length = 958
Score = 1033 bits (534), Expect = 0.0
Identities = 551/558 (98%), Gaps = 3/558 (0%)
Strand = Plus / Plus
Query: 1 tatatataattagagatgttgatggattttattttgtcacattaagccaatattagtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatataattagagatgttgatggattttattttgtcacattaagccaatattagtgaa 260
Query: 61 aagatgaaatgcaagagcagaggctgttgcacccctggagtactgaaaaataaataaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatgaaatgcaagagcagaggctgttgcacccctggagtactgaaaaataaataaaga 320
Query: 121 tcagtatgaatgagaaatggagagattttaagaaaggtaggagtctagtagctgttgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtatgaatgagaaatggagagattttaagaaaggtaggagtctagtagctgttgaga 380
Query: 181 gttgccccttcccctctatcttccttcttggccacctgtgatcggctattaatctccttg 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 gttgccccttcccctctagcttccttcttggccacctgtgatcggctattaatctccatg 440
Query: 241 atgtttatagttctacaatgaactatgagcacattttgagctcttattcatgaacattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 atgtttatagttctacaatgaactatgagcacattttgagctcttattcattaacattta 500
Query: 301 ttataatatagctcttgaattctcttt---atctcactgtttttccagttgtacctgctt 357
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ttataataaagctcttgaattctcttttttatctcactgtttttccagttgtacctgctt 560
Query: 358 tttgtttgtgtgatagtttataaaacaaacacccaaggacaagaattctattttgccctt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgtttgtgtgatagtttataaaacaaacacccaaggacaagaattctattttgccctt 620
Query: 418 gtgtaaatcttggatgagatctgatatagaaaatactgagcattcagttgggcttattga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtaaatcttggatgagatctgatatagaaaatactgagcattcagttgggcttattga 680
Query: 478 gttagacagttcattagggacatgaatattaatttctttgatagaaggcagctcattatc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttagacagttcattagggacatgaatattaatttctttgatagaaggcagctcattatc 740
Query: 538 tttttatcattgagctac 555
||||||||||||||||||
Sbjct: 741 tttttatcattgagctac 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 958
Length adjustment: 10
Effective length of query: 545
Effective length of database: 948
Effective search space: 516660
Effective search space used: 516660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no215_k24.g1 MSMg01no215_k24.g1 CHROMAT_FILE:
MSMg01no215_k24.g1 PHD_FILE: MSMg01no215_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:25 2005
(289 letters)
>mm_chr5_19121216_19121904
Length = 689
Score = 536 bits (277), Expect = e-157
Identities = 286/289 (98%)
Strand = Plus / Minus
Query: 1 tgtacaaaactatgtaattaagttaaactcttagcagctccccccaaaacctctagggag 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 489 tgtacaaaactatgtaattaagttaaactcttagcagctccccccaaaatctctagggag 430
Query: 61 cagggtaatctaaggctagcttctatagttgttacagtgtgctggctgagtggtctttaa 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 429 cagggtaatctaaggctagcttctatagttgttacagcgtgctggctgagtggtctttaa 370
Query: 121 tttgaaccctaaatgacacacctatgaaaaaatgttttttgatggtctctttttcagtag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tttgaaccctaaatgacacacctatgaaaaaatgttttttgatggtctctttttcagtag 310
Query: 181 cataattataagaaaggcaggcacacaatcatgggctaaaagacatgttctctgtaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cataattataagaaaggcaggcacacaatcatgggctaaaagacatgttctctgtaaaaa 250
Query: 241 ggacttgttcatgtcatttcagatctcatagacatcatgcatttgtcct 289
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 249 ggacttgttcatgtcatttcagatctcatagagatcatgcatttgtcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
