BAC Information

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BAC

Clone NameMSMg01-216G18
Chromosome5 (Build37)
Map Location 79,033,409 - 79,033,837
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669227, LOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216G18.T7 (MSMg01no216_g18.b1)MSMg01-216G18.TJ (MSMg01no216_g18.g1)
ACCAG396298AG396299
length726733
length of high quality
(start - end)
---658 (76 - 733)
definitionCHROMAT_FILE: MSMg01no216_g18.b1 PHD_FILE: MSMg01no216_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:25 2005CHROMAT_FILE: MSMg01no216_g18.g1 PHD_FILE: MSMg01no216_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAGGTGCGCGGA
AATCCGCGTGATTGCCCAAAACTTGGATGAGCATGAAGAGTCCCTCTTGG
ACATTTTGTGAAACATTTTGGCCCGGAAAATGATGTTATTCTATATTCAA
ATGGATAATCCAGCTTGCTACTTGAGACAATTTGATTGCGAAAAATGATT
TCCAGGATTTCTGTCTGAGGGAGTGTCGGGCCTTTTCCCAGAGAGAGGAT
TCCTGTAACCACGATAAGGTTGTGACCTGTATGAGCAAGCAGGTTGCCAA
TCCAGGCACCTTTACATGTTTCTGATTTCNCCNGGAATTCAAACAGACAA
TGCAGGGTATTTTTTGTTCCCCCCCCCCCGCACACATGTATXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXX
ACATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTATTATTTAGAATGTATTGTTTCA
TGTTCTTTTTTCCCTGTTTTACTGCCAAATATTCTTTTATACAATATATC
CTAATTACAATTTCTGTTCCTTCTAATCTTCTCATTTTCTCCTCAACTCC
CCTCATAAACAAACACATTTCCTTTCTATTTCTAACTAGAAAGGAAAAAA
GGCTTCCATGAGATAACAATCAAACATGACAACATAAAATATAATAAGGT
AGAAAAAAAACATACACATTGATGCTGGACAAGGAAGCCCAACAAAAGGA
AAAGATCCCCAAAAGCATGAAGAAGAATCAGAGAAACCCTCGTTCACATA
CTCAGAAGTTCCATAAAAATACTAAGCTGAAAGCACTAATATATACACAG
AAGACCTGGTCCAGACCTTGGCAAGTCCTGTGCTTGCTGCTTCTGTCTCT
GTGATTCATTCCTTCTAATATTTGGCATTAGGACACATTTTCACTTTAAC
CATATTTGAAAATGGCAATTAATATTGCATTGCTGTTTACATTTCTGTAA
CATTGATTAGTACTGCAAAGGAATATTTTGCTACTGAAATATAGAGGTTA
GCAAGAACTTGTGCAATGTATGGGAAAGAATGTATGACCCCATGCATTAG
CATCAGCAGTGTGAAATTGAGAATTTGATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_g18.g1 MSMg01no216_g18.g1 CHROMAT_FILE:
MSMg01no216_g18.g1 PHD_FILE: MSMg01no216_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:25 2005
         (658 letters)



>mm_chr5_79032780_79033837
          Length = 1058

 Score =  806 bits (417), Expect = 0.0
 Identities = 426/429 (99%)
 Strand = Plus / Minus

                                                                        
Query: 230  aaaaaacatacacattgatgctggacaaggaagcccaacaaaaggaaaagatccccaaaa 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 aaaaaacatacacattgatgctggacaaggaagcccaacaaaaggaaaagatccccaaaa 999

                                                                        
Query: 290  gcatgaagaagaatcagagaaaccctcgttcacatactcagaagttccataaaaatacta 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998  gcatgaagaagaatcagagaaaccctcgttcacatactcagaagttccataaaaatacta 939

                                                                        
Query: 350  agctgaaagcactaatatatacacagaagacctggtccagaccttggcaagtcctgtgct 409
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 938  agctgaaagcactaatatatacacagaagacctggtccagacctcggcaagtcctgtgct 879

                                                                        
Query: 410  tgctgcttctgtctctgtgattcattccttctaatatttggcattaggacacattttcac 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878  tgctgcttctgtctctgtgattcattccttctaatatttggcattaggacacattttcac 819

                                                                        
Query: 470  tttaaccatatttgaaaatggcaattaatattgcattgctgtttacatttctgtaacatt 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818  tttaaccatatttgaaaatggcaattaatattgcattgctgtttacatttctgtaacatt 759

                                                                        
Query: 530  gattagtactgcaaaggaatattttgctactgaaatatagaggttagcaagaacttgtgc 589
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 758  gattagtactgcaaaggaatattttgctactgaaatatagagggtagcaagaacttgtgc 699

                                                                        
Query: 590  aatgtatgggaaagaatgtatgaccccatgcattagcatcagcagtgtgaaattgagaat 649
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 698  aatgtatgggaaagaatgtatgaccccatgcattagcataagcagtgtgaaattgagaat 639

                     
Query: 650  ttgatcttg 658
            |||||||||
Sbjct: 638  ttgatcttg 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)