BAC Information

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BAC

Clone NameMSMg01-216L13
Chromosome5 (Build37)
Map Location 55,889,694 - 55,950,233
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216L13.T7 (MSMg01no216_l13.b1)MSMg01-216L13.TJ (MSMg01no216_l13.g1)
ACCAG396497AG396498
length728733
length of high quality
(start - end)
214 (427 - 640)353 (381 - 733)
definitionCHROMAT_FILE: MSMg01no216_l13.b1 PHD_FILE: MSMg01no216_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:50 2005CHROMAT_FILE: MSMg01no216_l13.g1 PHD_FILE: MSMg01no216_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,889,694 - 55,889,907)(55,949,884 - 55,950,233)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG
AATTCTCCCTTCTCCTAGAAAACTTGNAAAATCAAGCCTCCCACTTCACT
AAATGATGTGTGATTTTGTTCTGCAATCTGTGTGGGTCAGACACTCTACT
AAGTGTTAAGAGCAAGCTAATGCTCATAATTCCCCAAGATCAATGTTGGT
GCTTAGCGTCATCTGTTACCTCCACGCCCTCCTACATTCCCTAATCTCTA
TTCACAAGGTAAAAGGACACCATCTCATCTTTCTGCTGCTTAACTGGACT
TTAATTGGAATGTTTTTTTTGTTTCAAACCCAGAGNATTGTAGGGNGAGG
TTTTANTTCATTCTCCTGCCCTGCCCGCACTATTTCCATAGTGAAGCTCG
CTGAGGCACTGGCTTCAACATGAATAAAAATATGTAGATGCTTTTTTCAA
AAAAAAATAAGCACAAATATCTAATGTTAGTGCACAAGAAAGAAAAACCA
GAACTGATCCAGTATTTATAAGGAAGACATGTATTCATGAATGTTTCTTG
CAAAATGCTTGACTGAGTCTACCATTAACTCTCATCCTTCTATTCTCTTT
CTCTTTTTATCTCCTCTTTTTCCCTGCATAGAATATAATGTGATCAGAAG
GGAAAGTGATTCTTCTTAAATCTATGAGGTTGTTATTCTAAAATTTGCTG
TCACTGTAGAGGCACACAGGTACCCTAN
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAATTCGTTAGAGCACAAATATC
ATTTCTCATTTTTTTCCACCTTCTGTTGTTTTTAACATTTTGGCCCAGGC
CTTGTTACAGACTCTACTTTAGGGGCTCCCTCCTTCATTGCTCTCATTAA
AACTATTGACTTATAGATTCAGGAAAAGAAACAAATATTACTTAGCTCTG
TCTTTTTTTTTCCTTTTGCTAGAATCTGTAATACAAAACAAGCAAGTAAA
AATATCTTTAGAAAATTGCTGTGCATGCATGTGCATTTAACTAGCTACAT
GGGTATGTATATTATATATATCGCCCACAGTTTTATATATGCATTCAGAT
TACTAATATTAAGCTTAATAACATGTATTTTGGCAGTTAGAAATTGGTGG
CATCTAAAATAACATTCATCTATTTCATTAAATAATCTAATAAAATATAT
TTCAAGTAGTCTGTTCAAAAAACTTATTACCAGGCAAGACTGAAACTCTT
CAAGGTGCAAAGGAAATATAATTGAAGTAGGATTATAAATAAGTAATAGC
ACAAAATAAAATTGGAAAAAATTAAAATTCATACTATATTAACAGAAAGA
GTTTTTAAAGGCTGACATAGAAATCTCCTTTACCTTAGACATATGAAACA
TATCCAATTTATATTCATTATATTATAATTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_l13.b1 MSMg01no216_l13.b1 CHROMAT_FILE:
MSMg01no216_l13.b1 PHD_FILE: MSMg01no216_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:50 2005
         (214 letters)



>mm_chr5_55889494_55890107
          Length = 614

 Score =  352 bits (182), Expect = e-102
 Identities = 206/214 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatatgtagatgcttttttcaaaaaaaaataagcacaaatatctaatgttagtgcaca 60
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 aaaatatgtagattcttttttcaaaaaaaaatgagcacaaatatctaatgttagtgcaca 260

                                                                       
Query: 61  agaaagaaaaaccagaactgatccagtatttataaggaagacatgtattcatgaatgttt 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 agaaagaaaaaccagaactgatccagtatttataagaaagacatgtattcatgaatgttt 320

                                                                       
Query: 121 cttgcaaaatgcttgactgagtctaccattaactctcatccttctattctctttctcttt 180
           || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcgcaaaatgtttgactgagtctaccattaactctcatccttctattctctttctcttt 380

                                             
Query: 181 ttatctcctctttttccctgcatagaatataatg 214
           |||||||||| |||| ||||||||||| ||||||
Sbjct: 381 ttatctcctccttttgcctgcatagaacataatg 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no216_l13.g1 MSMg01no216_l13.g1 CHROMAT_FILE:
MSMg01no216_l13.g1 PHD_FILE: MSMg01no216_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:50 2005
         (353 letters)



>mm_chr5_55949709_55950461
          Length = 753

 Score =  669 bits (346), Expect = 0.0
 Identities = 349/350 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   tatatatgcattcagattactaatattaagcttaataacatgtattttggcagttagaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tatatatgcattcagattactaatattaagcttaataacatgtattttggcagttagaaa 466

                                                                       
Query: 64  ttggtggcatctaaaataacattcatctatttcattaaataatctaataaaatatatttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttggtggcatctaaaataacattcatctatttcattaaataatctaataaaatatatttc 406

                                                                       
Query: 124 aagtagtctgttcaaaaaacttattaccaggcaagactgaaactcttcaaggtgcaaagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aagtagtctgttcaaaaaacttattaccaggcaagactgaaactcttcaaggtgcaaagg 346

                                                                       
Query: 184 aaatataattgaagtaggattataaataagtaatagcacaaaataaaattggaaaaaatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaatataattgaagtaggattataaataagtaatagcacaaaataaaattggaaaaaatt 286

                                                                       
Query: 244 aaaattcatactatattaacagaaagagtttttaaaggctgacatagaaatctcctttac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaaattcatactatattaacagaaagagtttttaaaggctgacatagaaatctcctttac 226

                                                             
Query: 304 cttagacatatgaaacatatccaatttatattcattatattataattaaa 353
           ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 225 cttagacatatgaaatatatccaatttatattcattatattataattaaa 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)