BAC Information

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BAC

Clone NameMSMg01-217N23
Chromosome5 (Build37)
Map Location 90,877,750 - 90,878,101
singlet/doubletsinglet
Overlap genenone
Upstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18, Ankrd17
Downstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217N23.T7 (MSMg01no217_n23.b1)MSMg01-217N23.TJ (MSMg01no217_n23.g1)
ACCAG397246AG397247
length712741
length of high quality
(start - end)
54 (249 - 302)352 (67 - 418)
definitionCHROMAT_FILE: MSMg01no217_n23.b1 PHD_FILE: MSMg01no217_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:40 2005CHROMAT_FILE: MSMg01no217_n23.g1 PHD_FILE: MSMg01no217_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTAAACGACTCCTATAGGTTCCGGACCAGAGAANNNAGNA
AANNTGTCACCCGAAAAAAGAANGGGAANNGNGGGGAGGNGNNANNNNGG
ANNANNNGATTATAAACGCAGACTTGACGGNAAGGGNGAGGGGNGNAGGA
GGGNNCGGNGGGNNCGNAGNAGAANNCANNNNANGGAGGNNANANNNAGG
GGGNNNNNNNGAAGNGGNNNANNCCNNNGGNNNNCNCGGNNCCTTTTCCC
CAGGCTCTCCCAGGCAGCCTCTGCTCCACTTGTGTTCTCAATATTTCAGN
NNCCAAGNTTTTTTTTATTTTTNCCANGCCCAACCNCGACCCNAANCACN
ACTTTTGTTGGTTCCCCCCCCCCCCCCCCCCGNNNNNAANNNNNANNAAA
NNAGNGANNANNNCCNNAAANGNNNAAAANNNNAAAGGNGGGGGANNGGG
GAGNAANNNNNANANNAGNNNNNAAANNGGNNNNNAAANAGNNANNNNGA
AGGNGGAGAANNAAGNGGAGGNNNGGNGAANAAAGGAAAAGGGAGGAAAG
GAAAGANNAAGNGGGGGNGGGGAGGAAGANANAAGGAAAAAGGAGNANAG
AAAGGGAGGGAGAAAGGAAGAAAAGGGAAAAAGAAGGAGAAAGTTTTTTT
TATAGTATAGGTAGGGAGGTTATGTATATTGGTATGAGGTAATGTGTATT
TNAGTTTTGTGT
GCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCCAATCCATAGTCAGAGTCCCTGAGCTGTGGTCTAGCAG
AAAAGGAAGACATACTGGCCGGGCACATGTTATTGGTTTTATTGACATCA
GGGGAACAATATAGCTGAAGGACAAAGGAGATTTTCTAACATGTTGTAGA
GAAAGGGGTTTTCTTGTTAGGTCAAAGGCCAATACTATTCATGGTCCCGT
GCCCCCCATATCTCCATGGCTGTCCGATTCTAAACCATTGATAGAATTCA
AGGTCTTGTCTTCTATTGCTGGGGTTATAGCGTTAATTCTCTGACTAGTT
TTCTTACCTGTTTTCCTCTTGTCTTCTCTAACCTCTCCCCCAAATTAAAG
CTGCGGTAGTCCTGTGCACACCNAATTAACTCATTGAACTAAGGAAGCCA
TTCAATANTGTTGGACTACAAGCTTAAATGTTTAACTACAGCTAATATGA
GCTACAATGGCATCTTCAATACACCCCTTNTCATCTCGTACCACGNTTTC
TCTATAAACCTTTGGTTGATCTTTTCTAACTTTGGGGTGTGCGTGTATGC
GGTGTTTACATTCCTNNNCTTCCTGTTCTTGCCTATAACATGGTCCTCCC
ATCTGTTTCTTTTTTCCTATAAACCCTTTTCTTTTTTTCNCTCCACAATT
ACACGTACCGCGGGGGCTGGGGGGGGGGGGGGGGGGGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_n23.g1 MSMg01no217_n23.g1 CHROMAT_FILE:
MSMg01no217_n23.g1 PHD_FILE: MSMg01no217_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:40 2005
         (352 letters)



>mm_chr5_90877550_90878301
          Length = 752

 Score =  627 bits (324), Expect = 0.0
 Identities = 345/352 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatagtcagagtccctgagctgtggtctagcagaaaaggaagacatactggccgggcac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||
Sbjct: 201 ccatagtcagagtccctgagctgtggtctagcagaaaaggaagacagactgggtgggcac 260

                                                                       
Query: 61  atgttattggttttattgacatcaggggaacaatatagctgaaggacaaaggagattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttattggttttattgacatcaggggaacaatatagctgaaggacaaaggagattttc 320

                                                                       
Query: 121 taacatgttgtagagaaaggggttttcttgttaggtcaaaggccaatactattcatggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacatgttgtagagaaaggggttttcttgttaggtcaaaggccaatactattcatggtc 380

                                                                       
Query: 181 ccgtgccccccatatctccatggctgtccgattctaaaccattgatagaattcaaggtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgtgccccccatatctccatggctgtccgattctaaaccattgatagaattcaaggtct 440

                                                                       
Query: 241 tgtcttctattgctggggttatagcgttaattctctgactagttttcttacctgttttcc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tgtcttctattgctggggttatagcgttaattctctgactagttttcttacctgctttcc 500

                                                               
Query: 301 tcttgtcttctctaacctctcccccaaattaaagctgcggtagtcctgtgca 352
           ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 501 tcttgtcttttctaacctctcccccaaattagagcggcggtagtcctgtgca 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)