Query= MSMg01no217_o13.b1 MSMg01no217_o13.b1 CHROMAT_FILE:
MSMg01no217_o13.b1 PHD_FILE: MSMg01no217_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:45 2005
(423 letters)
>mm_chr5_33759301_33760123
Length = 823
Score = 735 bits (380), Expect = 0.0
Identities = 400/412 (97%), Gaps = 10/412 (2%)
Strand = Plus / Plus
Query: 16 gaattctatacaagaggactgtgctcacatcatttccacctctcctgccttctccaggtt 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattctatacaagaggactgtgctcacatcatttccacctctcctgccttctccaggtt 275
Query: 76 ctcccatgcccttttttcaaattcacgatctcttctttgtcatcacatatgaagacagtt 135
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 276 ctcccatgcccttttttcaaattcatgatctcttctttgtcatcacatatgaagacagtt 335
Query: 136 gctgttatctttagcagtcattctcaccgtcatgttctgggaggcagctaagggcaacaa 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gctgttatctttagcagtcattctcaccgtcatgttctgggaggcagctaagggcaacaa 395
Query: 196 cattcacctatgtcattttgatagtctcttaactccctggccacaacttaggagatttcc 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cattcacctatgtcattttgatagtctcttaactccctggccacaacttaggagatttcc 455
Query: 256 tgttcgtatacatggacttttgttaaatagtgtctacttaaagatttttttaaaatcaca 315
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 456 tgttcgtatacatggacttttgttaaatagtgtctacttaaggatttttttaaaatcaca 515
Query: 316 tgattatctcaatagatgcagaaaacacctttgacaaaatccaatataataaaataat-- 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgattatctcaatagatgcagaaaacacctttgacaaaatccaatataataaaataataa 575
Query: 374 ---ttttttcctagagagactaggaacagggaacatgtaaaggaaacccatc 422
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aagt-----cctagagagactaggaacagggaacatgtaaaggaaacccatc 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no217_o13.g1 MSMg01no217_o13.g1 CHROMAT_FILE:
MSMg01no217_o13.g1 PHD_FILE: MSMg01no217_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:45 2005
(383 letters)
>mm_chr5_33891433_33892215
Length = 783
Score = 671 bits (347), Expect = 0.0
Identities = 373/387 (96%), Gaps = 10/387 (2%)
Strand = Plus / Minus
Query: 1 aatagaccatgttaacaaatgggccgtgggctaacagatggtattcacaacatctgaaac 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 582 aatagaccatgttaacaaatgggcagtgggctaacagatggtattcacaacatctgaaac 523
Query: 61 tcacgagggattgatagaatacacaagagcccaccacccatcaccttgagaatgacaagg 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tcaggagggattgatagaatacacaagagcccaccacccatcaccttgagaatgacaagg 463
Query: 121 ctcctgaaagaaaaatgggcagaagctgggacctagtgactccccaggagaaccccgata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctcctgaaagaaaaatgggcagaagctgggacctagtgactccccaggagaaccccgata 403
Query: 181 agccaagtggcatggagtctcttggggtggtcagagtctccagtggtcagaggatctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agccaagtggcatggagtctcttggggtggtcagagtctccagtggtcagaggatctgga 343
Query: 241 cagaagggtatacactcagtaggtgtcagatgagcaaaagttagaagactgtactgttcc 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cagaagggtatacattcagtaggtgtcagatgagcaaaagttagaagactgtactgttcc 283
Query: 301 aaggtgcaggcaggagatgttgtctagccctg-----tatttttctatgcaaagccacct 355
|||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 282 aaggtgcaggcaggagatgttgtctagccctggaggaca-----ctatgcaaagccacct 228
Query: 356 ggtggtaggtagtggggtttcaggtgc 382
|||||||||||||||||||||||||||
Sbjct: 227 ggtggtaggtagtggggtttcaggtgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space: 289476
Effective search space used: 289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
