Query= MSMg01no217_p20.b1 MSMg01no217_p20.b1 CHROMAT_FILE:
MSMg01no217_p20.b1 PHD_FILE: MSMg01no217_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:52 2005
(279 letters)
>mm_chr5_121254831_121255509
Length = 679
Score = 470 bits (243), Expect = e-137
Identities = 267/275 (97%), Gaps = 2/275 (0%)
Strand = Plus / Minus
Query: 6 aattctgcacactaccttgatgtccatggctcactcagatattgtacagtccacatgctc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aattctgcacactaccttgatgtccatggctcactcagatattgtacagtccacatgctc 306
Query: 66 aggcatagcaccgaccac-ctcctcacttatcatgaatatttccgcacagatcattaagg 124
|||||||||||||||||| | || ||| ||||||||||||||||||||||||||||||||
Sbjct: 305 aggcatagcaccgaccacac-ccacacctatcatgaatatttccgcacagatcattaagg 247
Query: 125 gagacctttcctaggaccggtttctgaactagtttgctctgactgctgtggtaaagacga 184
||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gagcccttccctaggactggtttctgaactagtttgctctgactgctgtggtaaagacgc 187
Query: 185 tgctgctgcaaagtaattgggtggaaagggattgtctggctcacgttcctgcatcgcact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tgctgctgcaaagtaattgggtggaaagggattgtctggctcacgttcctgcatcgcact 127
Query: 245 ccatctctgagggaagcagaggcaggaactgaagc 279
|||||||||||||||||||||||||||||||||||
Sbjct: 126 ccatctctgagggaagcagaggcaggaactgaagc 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no217_p20.g1 MSMg01no217_p20.g1 CHROMAT_FILE:
MSMg01no217_p20.g1 PHD_FILE: MSMg01no217_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:52 2005
(288 letters)
>mm_chr5_121146648_121147335
Length = 688
Score = 526 bits (272), Expect = e-154
Identities = 284/288 (98%)
Strand = Plus / Plus
Query: 1 actttgtagatcaggcaggcctcgaactcagaaatctgcctgcctctgccccccgagtgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 201 actttgtagatcaggcaggcctcgaactcagaaatctgcctgcctctgcctccctagtgc 260
Query: 61 tgggattaaaggcgtgtgccaccacacccagctaagggtagccttttagcaaagtcttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggcgtgtgccaccacacccagctaagggtagccttttagcaaagtcttca 320
Query: 121 ggaggtcccagggggatgaggagcagacagccctcatctggagttcctgcgtcatcgtga 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaggtccctgggggatgaggagcagacagccctcatctggagttcctgcgtcatcgtga 380
Query: 181 ctatctagttctgagtgtaagcacattcaggtgacttcctctgttagccttagggtctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatctagttctgagtgtaagcacattcaggtgacttcctctgttagccttagggtctca 440
Query: 241 tcagggagatgtgccacgtgggcagagctcctgaggctgtggggagga 288
||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagggagatgggccacgtgggcagagctcctgaggctgtggggagga 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
