BAC Information

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BAC

Clone NameMSMg01-218O18
Chromosome5 (Build37)
Map Location 20,800,109 - 20,800,393
singlet/doubletsinglet
Overlap genenone
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik
Downstream geneFgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218O18.T7 (MSMg01no218_o18.b1)MSMg01-218O18.TJ (MSMg01no218_o18.g1)
ACCAG397911AG397912
length752726
length of high quality
(start - end)
---287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no218_o18.b1 PHD_FILE: MSMg01no218_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:04 2005CHROMAT_FILE: MSMg01no218_o18.g1 PHD_FILE: MSMg01no218_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XX
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCTTCTCCTGCAGTGCCAGGATAGA
AAAGGGCCTCCCGCTCAACAGACAGATTGAGAAGGACTGGCTGAAGGTGC
TTCGAGATGAAGAAATGTATGCCTTTGCGACTGCTGAGATGTCTCGGGTA
AGCTTTGTGTCCTGTGCTGCAAAGTGTGGCAGTGTCCCCTCATGACACAG
TGGGCCCCTTATCTGAGGCCTAGGAATAGAAATGGTTTGAACTTTCTATG
ATTTTCATGAGATATTTGAGTTATTGGAGCCCAAGTCTAAACACCAGACT
CACTTGTTTCTTATTACTCTCCCTANACAGGACCACGGTGACGTCAATGC
ATATTTATGCCTATTTACCCCCCACTGAAATAATGATAGGACACCATATA
TGGAATTATCTATTTGTGACATCATATCTATCCTCAAAAAGTTTGGAGCA
TTTTGGGTCTCAGGGTTTTGGATTAGGCTTTCTTCAACCTGTATAAGAAA
GTTTCCCACTCTAACAGGCATAGTCTGAATGGCTGGTAGATAGGGTTTTG
GCATGCAGAAAAGACTTTGGACTAGTAGTCCAAAACACCGACCTTTCTCC
CTGAGGAGCAGTTGAGACCCATCATCCCAGTCGTACTCTGAATTGGCTTG
TTTGAACTTTTTAGCCTCCCTCGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_o18.g1 MSMg01no218_o18.g1 CHROMAT_FILE:
MSMg01no218_o18.g1 PHD_FILE: MSMg01no218_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:04 2005
         (287 letters)



>mm_chr5_20799909_20800594
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcttctcctgcagtgccaggatagaaaagggcctcccgctcaacagacagattgagaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 485 atcttctcctgcagtgccaggatagaaaagggcctcccgctcaacagagagattgagaag 426

                                                                       
Query: 61  gactggctgaaggtgcttcgagatgaagaaatgtatgcctttgcgactgctgagatgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gactggctgaaggtgcttcgagatgaagaaatgtatgcctttgcgactgctgagatgtct 366

                                                                       
Query: 121 cgggtaagctttgtgtcctgtgctgcaaagtgtggcagtgtcccctcatgacacagtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cgggtaagctttgtgtcctgtgctgcaaagtgtggcagtgtcccctcatgacacagtggg 306

                                                                       
Query: 181 ccccttatctgaggcctaggaatagaaatggtttgaactttctatgattttcatgagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccccttatctgaggcctaggaatagaaatggtttgaactttctatgattttcatgagata 246

                                                         
Query: 241 tttgagttattggagcccaagtctaaacaccagactcacttgtttc 286
           ||||||  | ||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttgag-gagtggagcccaagtctaaacaccagactcacttgtttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)