Query= MSMg01no231_a05.b1 MSMg01no231_a05.b1 CHROMAT_FILE:
MSMg01no231_a05.b1 PHD_FILE: MSMg01no231_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:11 2005
(321 letters)
>mm_chr5_31309133_31309850
Length = 718
Score = 503 bits (260), Expect = e-147
Identities = 305/326 (93%), Gaps = 17/326 (5%)
Strand = Plus / Minus
Query: 5 gaattctaggacagtcaagtctacacagaggaaccctgtcctggaaaaccaaaaacaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gaattctaggacagtcaagtctacacagaggaaccctgtcctggaaaaccaaaaacaaca 592
Query: 65 acaacagcaaacaacccagaaacaaaacaaaacaaaacaaaaaagcaaacaa----aagc 120
||||||||||||||||||||||| |||| |||| |||||||||| ||||||| |||
Sbjct: 591 acaacagcaaacaacccagaaac-aaac-aaac-aaacaaaaaa-caaacaaaaacaaga 536
Query: 121 aaaaacaaaagaa-----cccccaaaaaaaacccaaaaacaaaaaacccccaaacattta 175
||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 535 aaaaacaaaagaacctcccccccaaaaaaa---caaaaacaaaaaacccccaaacattta 479
Query: 176 aagtatgaaattttaaaatatgttttcataagagcatcaacccaagaccggagagagtat 235
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aagtatgaaaatttaaaatatgttttcataagagcatcaacccaagaccggagagagtat 419
Query: 236 aaatgaggagatgcatcttgtcttggtgctacatgctctatgcccagtattcaaggagac 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aaatgaggagatgcatcttgtcttggtgctacatgctctatgcccagtattcaaggagac 359
Query: 296 tgaagcaaagtgatcgtgaatttgaa 321
||||| |||||||| ||||||||||
Sbjct: 358 tgaag-taagtgatcatgaatttgaa 334
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 718
Length adjustment: 9
Effective length of query: 312
Effective length of database: 709
Effective search space: 221208
Effective search space used: 221208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_a05.g1 MSMg01no231_a05.g1 CHROMAT_FILE:
MSMg01no231_a05.g1 PHD_FILE: MSMg01no231_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:11 2005
(292 letters)
>mm_chr5_31156907_31157601
Length = 695
Score = 528 bits (273), Expect = e-154
Identities = 289/295 (97%), Gaps = 3/295 (1%)
Strand = Plus / Plus
Query: 1 tccagaaccatccagaacaaggctgaatgtgggagaaatccttagagattacaaacaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tccagaaccatccagaacaaggctgaatgtgggagaaatccttagagattagaaacaact 260
Query: 61 ggagccctggattgtctttgagac--gtgtagaaggtgtatatccattaaagactttgaa 118
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagccctggattgtctttgagacatgtgtagaaggtgtatatccattaaagactttgaa 320
Query: 119 acagaaaccc-aaaaggaaatgtagttaggatagtggtaaggcattaaagattagactcg 177
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagaaaccccaaaaggaaatgtagttaggatagtggtaaggcattaaagattagactcg 380
Query: 178 aggtattgagacatttgccatttagaactcacgctgctagcatgggagctaccacaggag 237
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 aggtattgagacatttgccatttagaactgacgctgctagcatgggagctaccacaggag 440
Query: 238 tccctaagaaggaactgagggtctatagggacccttctttcttctttcttccttt 292
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tccctaagaaggaactgagggtctatagggacccttctttcttctttctttcttt 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 695
Length adjustment: 9
Effective length of query: 283
Effective length of database: 686
Effective search space: 194138
Effective search space used: 194138
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
