BAC Information

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BAC

Clone NameMSMg01-231B04
Chromosome5 (Build37)
Map Location 54,312,766 - 54,313,054
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19
Downstream geneStim2, EG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231B04.T7 (MSMg01no231_b04.b1)MSMg01-231B04.TJ (MSMg01no231_b04.g1)
ACCAG398005AG398006
length766733
length of high quality
(start - end)
---289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no231_b04.b1 PHD_FILE: MSMg01no231_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:16 2005CHROMAT_FILE: MSMg01no231_b04.g1 PHD_FILE: MSMg01no231_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTCAGTCCTTCCGTGCTTGTCCTCCCCTTTTTNNNNNNNNNNAATGGTA
GGAAGTAGGGGGTATCNTTTTGGGTATGTCGGATCTATCTATCACTCCCA
AANNNNNNCTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCC
GAAGGATCCGCCGGNAAATTCCTTTTGGTTCTTTTGCCCCCTTTTTTCAG
CTTTGGCCAATGAAGCCAGCCAGTCTTTTGCTTACTCCCCTCCCTTTTTG
GCCTTTTGGCCCTCGCGGAAATTTGGGGGGGGGCCAAGGCTTTTTTTAAA
ACCAAGTTTTTGGGGCCTTTAAAAAAATTTTTTTGTCTTTGGGGGTCCCC
CACGGGGCCCCCCTGGGGGGGGGGAAAAAACAGTTGGGCTCTTATAAAGG
GGGGTGAAAACCACGGGGCACTCTTTTTTTGTAAAAAACCCCCCTTTTTT
TTGTCTGAAAAAAAAAAAATTATAAAATCCCCCCCCCTCTTTTTGTTGTC
CCCCCCCCCCCTTTTTTTGTTTCCCCCCCCGATATAAAAAAAACCTACCC
GCCTTGCGCTCGCCCCCCCCCCTTTCTTTTTTGTGGTTTATACTAAAACA
TCTTCCTTATTCATCTTATCTCTCGGATTCGAGTCTAAATTTATATACCC
CCTTTTCTCTTTTCTCTTCCTTTGTTATTACCGCCGAAGAGCCTATCCCT
TTCTCTCCCCTCCTCCCTTAGCACAATACTATAAATATACTTGGACTCGT
GTCTTATCCACTCTCT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGGTACGTGTTCCACATTCTCAGGTA
CAGTCAGCTAAAGTGAGGTGGAGTCGGGGTACCTTGGACTTGGCACCACT
CACAGAACAGGGCTGACCTAGTCTTTGCTTCCAAACAAGCTCTCCGCTCT
ACCCCACAGGCCAGGGGAGGTGATGAGGAGCTCTTGGCTCTCGCTGAACC
CGACAAAGACCTGCCTCATTTGGGGTTAGTCCCTCACAACCTGCTGATGA
TAGCTGCTCAGGTCTTACCAGAGAGAAAAGTATGTAAATTATAAGCTGGA
GTGAGAGCAGAGTATGTTATATCCCGCCACACTGCAGTCGCCAGACCAAA
TGCTGCCTGTCATGAATGCACCCCGGGTGCAAAGCCGATCAAGTTCTGTC
ATGTCGCTTCTCATAGGCATTCGTCACCATGGCCCCCTTTCGTCTCCTGG
CTTGAGTTCCTTAGTTTTATGGCTAAGACTGAAGTTTTAATTTAGTCCAA
CTTTAACTAAGTAACCAGAGACCCAAGGAAGCTGAGACAGGGGAAGCCAG
GAGAAGCAAGACAAGGCTTAGGCAGAGAAAGAAAACCTAAGATGGATGAT
GAGGGCAACTGGAAAGGGGAAGTTGATATGGCAGGAAGCTGTTGCCCCTG
GCGCCTCCAGGGGAGTGGGCTGTAATACTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_b04.g1 MSMg01no231_b04.g1 CHROMAT_FILE:
MSMg01no231_b04.g1 PHD_FILE: MSMg01no231_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:16 2005
         (289 letters)



>mm_chr5_54312566_54313254
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtacgtgttccacattctcaggtacagtcagctaaagtgaggtggagtcggggtacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgggtacgtgttccacattctcaggtacagtcagctaaagtgaggtggagtcggggtacc 430

                                                                       
Query: 61  ttggacttggcaccactcacagaacagggctgacctagtctttgcttccaaacaagctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttggacttggcaccactcacagaacagggctgacctagtctttgcttccaaacaagctct 370

                                                                       
Query: 121 ccgctctaccccacaggccaggggaggtgatgaggagctcttggctctcgctgaacccga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ccgctctaccccacaggccaggggaggtgatgaggagctcttggctctcgctgaacccga 310

                                                                       
Query: 181 caaagacctgcctcatttggggttagtccctcacaacctgctgatgatagctgctcaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 caaagacctgcctcatttggggttagtccctcacaacctgctgatgatagctgctcaggt 250

                                                            
Query: 241 cttaccagagagaaaagtatgtaaattataagctggagtgagagcagag 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cttaccagagagaaaagtatgtaaattataagctggagtgagagcagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)