BAC Information

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BAC

Clone NameMSMg01-231E10
Chromosome5 (Build37)
Map Location 135,658,557 - 135,813,628
singlet/doubletdoublet
Overlap geneBaz1b, Fzd9, Fkbp6
Upstream geneGtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069
Downstream geneTrim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231E10.T7 (MSMg01no231_e10.b1)MSMg01-231E10.TJ (MSMg01no231_e10.g1)
ACCAG398145AG398146
length752753
length of high quality
(start - end)		322 (46 - 367)288 (81 - 368)
definitionCHROMAT_FILE: MSMg01no231_e10.b1 PHD_FILE: MSMg01no231_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:31 2005CHROMAT_FILE: MSMg01no231_e10.g1 PHD_FILE: MSMg01no231_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,658,557 - 135,658,872)(135,813,342 - 135,813,628)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCTGGTCTCCATAGTTCTAGGTCAGCCAGAGCTACACTCTGA
CTCAAGAAAAAAGAAAGAAAGAAACCCAAAGTTTAGGATGATCCTTTAGG
CCAGCCTAGATTCCAAAGGACCCTGTCTCACAAATGAAGAAGGAACTGGA
AACTCAGTTCCGCAGTTGAGAGCACTCCTTTAGAGCAGACTCGGGTTCAA
TTCCCAGAACCCACATGGATGCTAACAATGAAGGGTAACTTCAGTCCCAG
GAGCTATGATATCTGCTTGTGGCCTCTGAGGGAGTGGCACACCTGTAGTG
CAGTCATACACAGAGTACTATTCACTCATCCACACAAATAGTAAAACTTG
GCCGGGCATAGTGGCATGCACCTTTAATCCTAGCACTAGAGAGGCAAAAG
CAAGTGACTGTGGGTTTGAGGCCCTGGTCTACAGAGTTCCAGGACAGCCA
GAGCTACATCATGGAACTCTCTCAAAAGTAAATAAGATAATAACAAAAGA
TTCAGCTTGGTCATGTAGCTTTAAATGGCGCTTTTCCCGGCAGGAAACCA
GCGACTGCTAACTGGGGAGCAGACACAGGAGGAGGTCTGTAGAGGATCCC
TAGAAACTGCTGGCTTCAATCTCTGTCCTTTAGTATTAATTCGTTTATTC
AAATGGGACAGAGNCTACATGGAATGAGTAATCATGCTAAAATTATGATT
TA

TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCAGATGTCACCTCCTGC
AAACTTACAAAACTTGCCTTTCTCTCCACAGCCACTACAGGGACTATGTG
GACAGAGAGAGAGAGATGTGTCACCGCATGTTTGCTCCCTGTGGAAGCAG
ATCTTCAGTGGGAGGAAACTGAAGGTACTCAGCCGGCTGGGCCTTCATCC
AAAGATTCAGGCTCTGTCCATTGGGGAGATGCTCCTTCTCACAGCTCTCG
CTCGCCACTGAGAACAGCATAGGACAGAATCCACTGTGGGGGCTCCCCAC
AGAGTGGTCACTGAAGGTTTATCACTTGCCACCTCACCTTCATGTTTGGG
AGGTCCTGAGCTCTCCCATTCAACAACTTTTTCATACTTTGTGAAATTAA
ACTCTTCCTCAAAGTTTCTTAGAACTGAAGTCATTAGTGTGACACTTTAG
CTGGACTTGAAAGAGGAAAATTGAGTTTCTCTATTACTATGTTTTGGAGA
TAATTGCATGTAGTCGAGGCTGGCCTGGAATTTGCTATGTATCTTAGAAT
GACCTTGACTCTACTAGCTGAGTACTAAAATTACAGGCTTGTGCCATCAT
CAGAGTCTGAGTAATGTAGTAGTAGGTATGGAACCCTGAGCCTGTGAGCC
CAGTAAGCAAGCACTCTGCCCACCAAGCTGCATGCTCAGCCTGGCATGCA
TGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_e10.b1 MSMg01no231_e10.b1 CHROMAT_FILE:
MSMg01no231_e10.b1 PHD_FILE: MSMg01no231_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:31 2005
         (322 letters)



>mm_chr5_135658353_135659074
          Length = 722

 Score =  534 bits (276), Expect = e-156
 Identities = 306/316 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggctggtctccatagttctaggtcagccagagctacactctgactcaagaaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggctggtctacatagttctaggtcagccagagctacactctgactcaagaaa 264

                                                                       
Query: 65  aaagaaagaaagaaacccaaagtttaggatgatcctttaggccagcctagattccaaagg 124
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagaaagaaagaaaagaaaagtttaggatgatcctttaggccagcctagattccaaagg 324

                                                                       
Query: 125 accctgtctcacaaatgaagaaggaactggaaactcagttccgcagttgagagcactcct 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accctgtctcacaaacgaagaaggaactggaaactcagttccgcagttgagagcactcct 384

                                                                       
Query: 185 ttagagcagactcgggttcaattcccagaacccacatggatgctaacaatgaagggtaac 244
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttagagcggactcgggttcaattcccagaacccacatggatgctaacaatgaagggtaac 444

                                                                       
Query: 245 ttcagtcccaggagctatgatatctgcttgtggcctctgagggagtggcacacctgtagt 304
           |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct: 445 ttcagtcccaggagctatgacatctgcttgtggcctctgagagcgtggcacacctgtagt 504

                           
Query: 305 gcagtcatacacagag 320
           ||||||||| ||||||
Sbjct: 505 gcagtcataaacagag 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no231_e10.g1 MSMg01no231_e10.g1 CHROMAT_FILE:
MSMg01no231_e10.g1 PHD_FILE: MSMg01no231_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:31 2005
         (288 letters)



>mm_chr5_135813142_135813829
          Length = 688

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccagatgtcacctcctgcaaacttacaaaacttgcctttctctccacagccactacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 caccagatgtcacctcctgcaaacttacaaaacttgcctttctctccacagccactacag 428

                                                                       
Query: 61  ggactatgtggacagagagagagagatgtgtcaccgcatgtttgctccctgtggaagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggactatgtggacagagagagagagatgtgtcaccgcatgtttgctccctgtggaagcag 368

                                                                       
Query: 121 atcttcagtgggaggaaactgaaggtactcagccggctgggccttcatccaaagattcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atcttcagtgggaggaaactgaaggtactcagccggctgggccttcatccaaagattcag 308

                                                                       
Query: 181 gctctgtccattggggagatgctccttctcacagctctcgctcgccactgagaacagcat 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 307 gctctgtccattggggagatgctccttctcacggctctcgctcgccactgagaacagcat 248

                                                          
Query: 241 aggacagaatccactgtgggggctccccacagagtggtcactgaagg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aggacagaatccactgtgggggctccccacagagtggtcactgaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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