BAC Information

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BAC

Clone NameMSMg01-231G07
Chromosome5 (Build37)
Map Location 74,270,655 - 74,270,959
singlet/doubletsinglet
Overlap genenone
Upstream geneSlain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
Downstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231G07.T7 (MSMg01no231_g07.b1)MSMg01-231G07.TJ (MSMg01no231_g07.g1)
ACCAG398222AG398223
length724734
length of high quality
(start - end)
316 (46 - 361)84 (176 - 259)
definitionCHROMAT_FILE: MSMg01no231_g07.b1 PHD_FILE: MSMg01no231_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:40 2005CHROMAT_FILE: MSMg01no231_g07.g1 PHD_FILE: MSMg01no231_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTCCCAGAACCAACACGGTAGTCATCAGTAACTCCAGTTCCAG
GGATCTGGTGCTCTCTTTTGACCTCAGGCATGCACTTGGTATGCATACAT
ACATACATACATACGCGCAGGCATGCTCATACACATAAAATAAAGCATCA
TTCATCCACACAAAATACCTATGTCTTTAAAAAGAGATGAGGAAAGCTAG
ACATATAGAGATGAGACCTACATCACGGCCCCCACTGTTACATGATGAGG
GTAAGATTCTGAACGCAGGTTCTCATAGACTGTGTGGCTTTAGTCGTATC
TATACTATGTATTTTTTTTCCCCGNTCTGACCCCATTGTTACAAGACATA
TAAATTAAATTCAAAGTATCACCCAAACAAAGAAAAATCATTTGCTTTGA
GGCACAATGTACTGCATTTGATAAGACAATGATACTCTGGTTTCTCTTCT
GATCATATAAATCTTTCCCTTTAACTAAAGATTTCAGACAATGATCCAAA
TGCTTGAAGCAACAGTCAGCTAAAATTTGACATATGGACTTCTTGCTGAA
TTAAAAACACTTTCCTGCCTGACATAATTGTGCCATTGCTGCACTTTCTA
CATAATTAAATTTTAATCACCTTTCCCAACATTGTTACTAATCATTAAAT
CACTCTGCTGTGGAAACATGTCTC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGGTGACACTGGAGGTCCTTGCCCTC
TTCACTGAACTTGATCTTGCCCTCCTGTAGATCTCATAGTTAGTCACTGG
CTCCGAGTCAAGGCAGGGTGGGCGGGAATTGAATCATATAATTTTTTTTA
AAGGGAGAGTCAGATCAAGAATTTTCAAACCTTTTTAAAAAAGTTTATTA
TTGCAACTGTGTGTGCATGGTGCGTTTGTGTGTCAGAGATCGGCTTTCTG
GAGTCAGCACTGTGTTGATTTTTTTCTCTCGCTGCTTCTGGTCCTCTTTA
ACCTCTGTTTTGTCTGCTCCCCCCCCCCCCCCGAAGATTCTCTTGTATTC
TGAATTGCGATGCCGCCTTAACGCAAAAAAAAATACTATACTTTGAGTGT
GGCGTATACCACCCTTTTCCCCGTGTCGGAGATATGGATAGTTCCCGCTT
TGCTCCATAAGCCCTTCCCCATTTCCCGATGGTCCCCCTTGCCGGTCTTG
ATCTCATCCGTATCCCTTTTGTGTTACGTTTTTGAGCCCAGGACGATTAC
GTTCTTCCTTGGTCTTTTTTGCCTACCCTCCGCTATTTTCTTTCCCTTCT
TTCCCCTCCATCCTCCTTTTCTTCCTTTTTTTCCATTTTATACCCCCTTT
ACCCTCCTTTTTTCCGTTCCATTTTTCCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_g07.b1 MSMg01no231_g07.b1 CHROMAT_FILE:
MSMg01no231_g07.b1 PHD_FILE: MSMg01no231_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:40 2005
         (316 letters)



>mm_chr5_74270306_74271021
          Length = 716

 Score =  518 bits (268), Expect = e-151
 Identities = 298/310 (96%), Gaps = 5/310 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttcccagaaccaacacggtagtcatcagtaactccagttccagggatctggt 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 654 gaattcagttcccagaaccaacacggtagtcatcactaactccagttccagggatctggt 595

                                                                       
Query: 65  gctctcttttgacctcaggcatgcacttggtatgcatacatacatacatacatacgcgca 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 594 gctctc-tttgacctcaggcatgcacttggtatgcatacatacatacataca----cgca 540

                                                                       
Query: 125 ggcatgctcatacacataaaataaagcatcattcatccacacaaaatacctatgtcttta 184
           ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct: 539 ggcatgctcatacacataaaataaagcatcattcacccacacaatatagctatgtcttta 480

                                                                       
Query: 185 aaaagagatgaggaaagctagacatatagagatgagacctacatcacggcccccactgtt 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 479 aaaagagatgaggaaagctagacatagagagatgagacctacatcacggcccccactgtt 420

                                                                       
Query: 245 acatgatgagggtaagattctgaacgcaggttctcatagactgtgtggctttagtcgtat 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 419 acatgatgagggtaagattctgaacgcaggttctcagagactgtgtggctttagttgtat 360

                     
Query: 305 ctatactatg 314
           ||||||||||
Sbjct: 359 ctatactatg 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)