Query= MSMg01no231_l06.b1 MSMg01no231_l06.b1 CHROMAT_FILE:
MSMg01no231_l06.b1 PHD_FILE: MSMg01no231_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:03 2005
(321 letters)
>mm_chr5_97417395_97418117
Length = 723
Score = 572 bits (296), Expect = e-168
Identities = 312/318 (98%), Gaps = 2/318 (0%)
Strand = Plus / Minus
Query: 5 gaattcccatgttggccccatattatagataaatgtgtttactgtgatctcaaaacttac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattcccatgttggccccatattatagataaatgtgtttactgtgatctcaaaacttac 463
Query: 65 aaatttagggacacaaacaggctccaaatatagatttttctcccagaaacaccttgataa 124
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 462 aaatttagggacacaaagaggctccaactatagatttttctcccagaaacaccttaataa 403
Query: 125 aatataactagacattgtgtaaaagtgggttttcacattcattttcattctggagaaaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aatataactagacattgtgtaaaagtgggttttcacattcattttcattctggagaaaca 343
Query: 185 caagaccacttatgtgcctattctaagctgaaatgcatcttttcctttttttttttt--a 242
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 342 caagaccacttatgtgcctattctaagctgaaatgcatcctttcctttttttttttttta 283
Query: 243 acccacttcttaacttaggctatgcacaaatttcttgttattgaacttcttcaattatgt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acccacttcttaacttaggctatgcacaaatttcttgttattgaacttcttcaattatgt 223
Query: 303 tatgcctgggtgtgtagg 320
||||||||||||||||||
Sbjct: 222 tatgcctgggtgtgtagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 723
Length adjustment: 9
Effective length of query: 312
Effective length of database: 714
Effective search space: 222768
Effective search space used: 222768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_l06.g1 MSMg01no231_l06.g1 CHROMAT_FILE:
MSMg01no231_l06.g1 PHD_FILE: MSMg01no231_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:03 2005
(293 letters)
>mm_chr5_97320301_97320993
Length = 693
Score = 555 bits (287), Expect = e-162
Identities = 290/291 (99%)
Strand = Plus / Plus
Query: 1 aacaccaacatgcaaattacaaacaagagccacactgatgagacacttgctatgttctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaccaacatgcaaattacaaacaagagccacactgatgagacacttgctatgttctgg 260
Query: 61 ggcccagacaaatgccacaggggttttttctgctcacaacaaatacatctgattccgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcccagacaaatgccacaggggttttttctgctcacaacaaatacatctgattccgtga 320
Query: 121 cctagaaagaggtaagcagtaattccagctcgtctggttcctgggacttacacaaagggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctagaaagaggtaagcagtaattccagctcgtctggttcctgggacttacacaaagggc 380
Query: 181 ttagctggaattgaaccctgcaaagtaggaatacacacctgtgtagtcatcccaaactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagctggaattgaaccctgcaaagtaggaatacacacctgtgtagtcatcccaaactca 440
Query: 241 gcctctcagggaccgctcccttccttctttctcatggagtcttatttgtat 291
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctctcggggaccgctcccttccttctttctcatggagtcttatttgtat 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
