BAC Information

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BAC

Clone NameMSMg01-231M24
Chromosome5 (Build37)
Map Location 117,737,750 - 117,737,927
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3, Taok3, Pebp1
Downstream geneLOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231M24.T7 (MSMg01no231_m24.b1)MSMg01-231M24.TJ (MSMg01no231_m24.g1)
ACCAG398515AG398516
length768885
length of high quality
(start - end)
178 (481 - 658)54 (189 - 242)
definitionCHROMAT_FILE: MSMg01no231_m24.b1 PHD_FILE: MSMg01no231_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:11 2005CHROMAT_FILE: MSMg01no231_m24.g1 PHD_FILE: MSMg01no231_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAGGGGGGGATANAAAAATAAAAACCCCCCCNNCCCCCNCAAACANNANA
CTCAAAATTTGGGCGCTAAACGAATACTATATTCCAAGGCGANGGAANNN
ANNNNGTTTTCCAAAGCAGAGNGNNNGNAAAAGGNNNNGNNNNAGNCNNN
NAGGAANNCAGTTGTTGCCACAAGAAGGGGGNGNGAAGANGGGGNNGGNA
GNCNANNAANANNNANNCNAAGGAGGNAGAGNNGNCANGGAAGCCNCAAC
CAAGAACCAGCCANNCCNCNCAACCAGGGGCGGGCAANNCGGCCCAAATT
TATAGGCACAACAGNTGGAAGGNTAAATGATGAGAGTTTCCGGTGTGGGC
ATTTAGGCGGCGATGTTTTTTTTTCANCNGNGCAGAACNNGCAGAACGGC
GGCTATGGATTCACCCGCACTCCGCGGTTAAGCCCAACCAACACACTGAT
TGATTCCCGGGAGGCTGAAATTAGAAGAAATTTAAAGAACTTTTAAAACA
ACAACAAAAGATAACGCAGGGAAGAAACCTGGCTCGTTTGAAGAAGTGCT
AGGGAGAAAGCATGGCCTTATCTCCGGGAACTGCGAAATGGGGCAGAGAG
ACCTTCAAATGCAAAGGAGAAGCCGCAACATTAATCTGCACCACAGCCAT
GCACGCACTGGCCTGCAGGCACAACCCGCGAAGTTTCGCAGTGACCCTGG
TGCTTGTTTTGACCAGCTCCGGCTCAGCCAATCATAGAGCGAAGGGGCGG
GAAACGACCTGAGGATGT
AAAAAAAAAAAAAAAAAAAAAAAAAACCCCCCNNNCCCCCCNNCNACNAN
NNAACCATGATATGGGTGGCCTGGGGGNCGNCTGGCTTTCCCAGNNGAAG
NAANNANAGAAGGATACCAGNANGAGGGAGNNNGGNNNGGAGGAAAANNN
CNNGGGGGGNNGGAGGNTTAACCGAGNNCCNGAGACNCGAGAGAGGAGGA
GAGGGCAGGGAGAGGAAGAGGAGAAGGAGGAAGGGGAAGGNAGGGNGAGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNN
NNTTTTTTTTTNNNNNNNNNNNNTNTNTNNNNTNTTNNNNTTNNNNNTNN
NNNNNNNNGGNGNNNNGGGGGTTTTTTTTTTTTTTCCGAAAGAGCGCGAA
AACGGGAACGGAGAAGGGGGGAGGCCCCCCCCCCCCCCACGGAGAAAGGA
GAAGNGAAAAANAGGCGAGGGGGAGGGGGGGGGCCGCCCACCAAAAAAAA
AAAGAGAAGAGGGNCGGGCGGGGAAGGANGGCGCCGGCAAACAGAACCCA
CGGACAACCGAGAAGCAACGAGGACGAAGCGGCAAAAGGGAACACGAAGC
AACCGGCGGACGAACGGGAAAAGAGCGGAGCGGAGCGGCGGAGGAGGACA
GAAGGGAAGGGGAGAGCAGAGAAAAGACAAGAGAGGAGAAGGCGACGGGG
GACAGAGAAAGGGAAAGCGGAAGGAGCGAAAGGAAGGGGAAGACGGGGGA
GAGCGGGAGAAGCAACACGAACGCCAANGAAGGAGGGGAAAACAAACAGA
GATTTTTTTTTTTTTTTTTGGGAAGAGCGGCGAGGACGGAGTGCGGCGTT
TATGCTAGCTTCGTTCCGTGTTATATTGGCTGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_m24.b1 MSMg01no231_m24.b1 CHROMAT_FILE:
MSMg01no231_m24.b1 PHD_FILE: MSMg01no231_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:11 2005
         (178 letters)



>mm_chr5_117737550_117738127
          Length = 578

 Score =  337 bits (174), Expect = 3e-97
 Identities = 177/178 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaagaacttttaaaacaacaacaaaagataacgcagggaagaaacctggctcgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttaaagaacttttaaaacaacaacaaaagataacgcagggaagaaacctggctcgtttg 319

                                                                       
Query: 61  aagaagtgctagggagaaagcatggccttatctccgggaactgcgaaatggggcagagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aagaagtgctagggagaaagcatggccttatctccgggaactgcgaaatggggcagagag 259

                                                                     
Query: 121 accttcaaatgcaaaggagaagccgcaacattaatctgcaccacagccatgcacgcac 178
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tccttcaaatgcaaaggagaagccgcaacattaatctgcaccacagccatgcacgcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)