BAC Information

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BAC

Clone NameMSMg01-231O04
Chromosome5 (Build37)
Map Location 29,440,001 - 29,440,301
singlet/doubletsinglet
Overlap genenone
Upstream geneEn2, Cnpy1, Prr8, Shh, LOC100039258
Downstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231O04.T7 (MSMg01no231_o04.b1)MSMg01-231O04.TJ (MSMg01no231_o04.g1)
ACCAG398567AG398568
length749755
length of high quality
(start - end)
318 (386 - 703)301 (77 - 377)
definitionCHROMAT_FILE: MSMg01no231_o04.b1 PHD_FILE: MSMg01no231_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:16 2005CHROMAT_FILE: MSMg01no231_o04.g1 PHD_FILE: MSMg01no231_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
AGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGTCTCTATAGGCAACACACCACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAAGATATAATTTGCTAAACACATGGAACTCAAGG
AGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATCTGGGAN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTAATTCGTAGAAGTAGAAGC
AGTTTCAAGTCTTCGATAACTCAATTATTTAGTTTAAGGAAGGAACTAAA
GGTCTGCTCACGCTTCTAAAGTACACTAGACCTTTAATTTTCTTTTATGA
GCATATATTGGTTAACCAGAGTAATAGTTCACAGTGACATTTCTTACATG
TATACAAGACACCTGTGTCATATCAGTCCTGTTTCCCTTGCTTCTCTGCT
CTTCCCCTTACACATGGCTAATACTTCTTTCTTTACTCTCATGTCCCATC
CCACACTTGTGAGAGGCACTTGTGGTCACTCGATGCTTATCTTTCAGAAT
TCTTTATCTCACTCACCATGGGGATTCCAGTTCCATCCATTTTCCTGTGA
ACAACATCATTTCATTTTTCCTGGAGGCTGAGTAAAATGTCGTCATGAGA
ATGCATCACATCTCATTTATTCCTGGTGAGGAACACCTTAGCTTGTGCTA
GACCTTTCCTGCTGTAAAGAGAACTGTAAAAAACACAGATGCCCATGTCT
CTCGAATAAGCTGACTGGACCTCCAGAAGTCATATGGCTGCTCAGACAGA
AGTTCCGAACTTAGCTTTTTTAACTATACCCCTACTTACTGCCATGGTGA
ATTTTTAGTTTACCTCCCACAAGCAGTAAATAAAATTTCCTTTCCTCCTA
CAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_o04.g1 MSMg01no231_o04.g1 CHROMAT_FILE:
MSMg01no231_o04.g1 PHD_FILE: MSMg01no231_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:16 2005
         (301 letters)



>mm_chr5_29439801_29440501
          Length = 701

 Score =  528 bits (273), Expect = e-154
 Identities = 294/301 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctaattcgtagaagtagaagcagtttcaagtcttcgataactcaattatttagttta 60
           ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 actctaattagaagaagtagaagcagtttcaagtcttcaataactcaattatttagttta 260

                                                                       
Query: 61  aggaaggaactaaaggtctgctcacgcttctaaagtacactagacctttaattttctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aggaaggaactaaaggtctgctcacgcttctaaagtacactagacctttaattttatttt 320

                                                                       
Query: 121 atgagcatatattggttaaccagagtaatagttcacagtgacatttcttacatgtataca 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagcatatattggttagccagagtaatagttcacagtgacatttcttacatgtataca 380

                                                                       
Query: 181 agacacctgtgtcatatcagtcctgtttcccttgcttctctgctcttccccttacacatg 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacacctgtgtcatatcagtcctgtttcccttgcttctctgctcttccccttacacatg 440

                                                                       
Query: 241 gctaatacttctttctttactctcatgtcccatcccacacttgtgagaggcacttgtggt 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaatacttctttctttactcccatgtcccatcccacacttgtgagaggcacttgtggt 500

            
Query: 301 c 301
           |
Sbjct: 501 c 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)