BAC Information

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BAC

Clone NameMSMg01-232B15
Chromosome5 (Build37)
Map Location 50,623,362 - 50,623,757
singlet/doubletsinglet
Overlap geneEG637307
Upstream geneLOC100041659, EG433885, LOC666223, Gpr125
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232B15.T7 (MSMg01no232_b15.b1)MSMg01-232B15.TJ (MSMg01no232_b15.g1)
ACCAG398717AG398718
length718734
length of high quality
(start - end)
396 (132 - 527)344 (74 - 417)
definitionCHROMAT_FILE: MSMg01no232_b15.b1 PHD_FILE: MSMg01no232_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:31 2005CHROMAT_FILE: MSMg01no232_b15.g1 PHD_FILE: MSMg01no232_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTAG
GTTCACGCTTTTGCAGTGATGAAGAGCACTGCAGACAATATGTCTCCAGC
CTCTCCATTAAACTCGCAGATTGATACTTGTATCCGCAGTGTGAGTCTTT
CACTGATGGGCTCCCTGCGTTATAAAAGACAGCTATTAGCATGACTATTT
TTTCCCATTCGGTATGAGAACAGTCTGAAGATTCCACCCTTGAACCAGGA
GGAAATCCTGACTCTAGTCTGACCAAGTCTAGTCTCAGACTCTTTCTTCT
CCTTTTTCTTAGTTATTTTATGTATTTCCATCTCAAATGTTATCCCTTTT
CCCAGTTTCCCCTCCACAGCCCCTCTATCCCCTTCCCACTCCCCTTCCTC
TATGAGGCCGCCCCACACCCACCAAACTGCTCCTGCCTCAGCAACCTAGC
ATTCTCCTACCCTGGGGCATTGAGCATCCACAGTCTCAGACTTTTAAGGC
ACCCAGACTGTGGTCTATTTCAGTAGCCTGAATAAACTGAGATGGGAAAA
TTCAGAATCTACGGAACTTCAGAGAGTCTAGTATCAGATGCGCAAATGCT
CAGCGTGAGGAAACCCACTCGGATGTGAGAGGTTCTATGTCTGAAACCGC
TCACTGATCTTTGCATTTGCTTCTGGCAATCATTACTTCACTTGGTCATT
ACCTTTGTCATAATCTCG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATAACAACAAAAACACAGAGAGCTCA
CATACTCACAGAAACTAAATAATACTTTACTCATTGATAATGTGGTCAGG
AAAAAATGAAAGAGATTAAAGACTTCTAGAATTTAATGAAAATGAAGCCA
CAGTATGCCCAAACTTATGGGACACAATGAAAGCAGTGCTTAGAAGAAAA
TTCATAACACTGAGTACCATCATAAAGAAATTAGAAAGACCATACACTAG
CAACTTAGCAGCACATCTGAAATCTCTAGAACAAAGAGAAGAAAACACAC
CCAAGAGGAGTACATGGCAGGACATGGTCAAACTCAGGGTTAAAATCAAC
CAATTAGAAACAGAGAACCCCCCCACAGAGTTAACAAAGCTAAGAGCTGG
TTCTTTAAGAAAAGCAACAAGATAAATAAACCCTTAGCCAAACTAACTAA
AGGGCACAGAGACTGTATCCAAATTAACAAAATCAAAAATGAAAAGGGAA
ACATAACAGAAACTGAAGAAATTCAGGAAATCATCAGATCCTACTACAAA
AGCCTATATTCAACCGTATCCAAACACAACTGCATGACCTAATACAGCAA
TTTAAGATGCTGATCACGATATGGAGAGATGGCTCAGAGGTTAAGAGTGC
TGACTGCTCTTCTTAAGTTCAATTCCCAGCAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_b15.b1 MSMg01no232_b15.b1 CHROMAT_FILE:
MSMg01no232_b15.b1 PHD_FILE: MSMg01no232_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:31 2005
         (396 letters)



>mm_chr5_50623162_50623957
          Length = 796

 Score =  743 bits (384), Expect = 0.0
 Identities = 393/396 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccgcagtgtgagtctttcactgatgggctccctgcgttataaaagacagctattagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccgcagtgtgagtctttcactgatgggctccctgcgttataaaagacagctattagca 260

                                                                       
Query: 61  tgactattttttcccattcggtatgagaacagtctgaagattccacccttgaaccaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactattttttcccattcggtatgagaacagtctgaagattccacccttgaaccaggag 320

                                                                       
Query: 121 gaaatcctgactctagtctgaccaagtctagtctcagactctttcttctcctttttctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatcctgactctagtctgaccaagtctagtctcagactctttcttctcctttttctta 380

                                                                       
Query: 181 gttattttatgtatttccatctcaaatgttatcccttttcccagtttcccctccacagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttattttatgtatttccatctcaaatgttatcccttttcccagtttcccctccacagcc 440

                                                                       
Query: 241 cctctatccccttcccactccccttcctctatgaggccgccccacacccaccaaactgct 300
           ||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||
Sbjct: 441 cctctatccccttcccactccccttcctctatgagggtgctccacacccaccaaactgct 500

                                                                       
Query: 301 cctgcctcagcaacctagcattctcctaccctggggcattgagcatccacagtctcagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgcctcagcaacctagcattctcctaccctggggcattgagcatccacagtctcagac 560

                                               
Query: 361 ttttaaggcacccagactgtggtctatttcagtagc 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttaaggcacccagactgtggtctatttcagtagc 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)