BAC Information

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BAC

Clone NameMSMg01-232B21
Chromosome5 (Build37)
Map Location 84,267,328 - 84,267,662
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2, LOC100039608
Downstream geneLOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232B21.T7 (MSMg01no232_b21.b1)MSMg01-232B21.TJ (MSMg01no232_b21.g1)
ACCAG398727AG398728
length735737
length of high quality
(start - end)		614 (45 - 658)663 (75 - 737)
definitionCHROMAT_FILE: MSMg01no232_b21.b1 PHD_FILE: MSMg01no232_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:32 2005CHROMAT_FILE: MSMg01no232_b21.g1 PHD_FILE: MSMg01no232_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGTGTCTTGCGACTCAAGTATGAGAGTTTTCCCATCAAGTTCTA
GAGGGTAACCCCAAGCAGTGGCAACTCTCTGCTAATGTTTGGGGTGGAGT
TCTATAGGATTCTACAGACCAACATTTTGAAAATAAATAACCTATCTTAT
CAGGGAAAAGCATGGTTCAGAGTAATAACATTTGTAGTTATTTTCTATAT
GCATATAGTTTAAAACCTTCTATAATAATAATGTTCCATATGACTTTTCA
AAGGCCTTTACTGCCTATTATTCTTGCCAATATTTCTTCTTATACCCTGC
CCCCCTATCTCTCTCCCCACTTAAACCTTTTTTTTGAATCATTGTTGTTT
ATTTTTTCCATTTTTTTATTAGGCATTTAGCTCATTTACATTTCGAATGC
TATACCAAAAGTCCCCCATAGCCACCCACCCCCACTCCCCTACCCACCCA
CTCCCCTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTT
GCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGCCTAGGCCATCTTT
TGATACATATGTAGCTAGAGTCAAGAGCTCCGGGGTACTGTTTTTTTTTT
TTTTTTTTTCTNCTTCCAAGGCTTATTTATTTATTATATCTAAGTACACT
GTAGCTGTCTTCAGACACTCCAGAAGAGGGCGCCA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAACCATCAGGGAAATGCAAA
TCAAAACATCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACGGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGAAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTA
AACACATGAAACTCAAGAAAAATGAATACTGTAGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_b21.b1 MSMg01no232_b21.b1 CHROMAT_FILE:
MSMg01no232_b21.b1 PHD_FILE: MSMg01no232_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:32 2005
         (614 letters)



>mm_chr5_84267322_84268334
          Length = 1013

 Score =  627 bits (324), Expect = 0.0
 Identities = 333/336 (99%), Gaps = 2/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtgtcttgcgactcaagtatgagagttttcccatcaagttctagagggtaa 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 341 gaattctctgtgtcttgcgactcaagtatgagagttttcccatcaagttctagaggctaa 282

                                                                       
Query: 65  ccccaagcagtggcaactctctgctaatgtttggggtggagttctataggattctacaga 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ccccaagcagtggcaact-tctgctaatgtttggggtggagttctataggattctacaga 223

                                                                       
Query: 125 ccaacattttgaaaataaataacctatcttatcagggaaaagcatggttcagagtaataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ccaacattttgaaaataaataacctatcttatcagggaaaagcatggttcagagtaataa 163

                                                                       
Query: 185 catttgtagttattttctatatgcatatagttt-aaaaccttctataataataatgttcc 243
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162 catttgtagttattttctatatgcatatagttttaaaaccttctataataataatgttcc 103

                                                                       
Query: 244 atatgacttttcaaaggcctttactgcctattattcttgccaatatttcttcttataccc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 atatgacttttcaaaggcctttactgcctattattcttgccaatatttcttcttataccc 43

                                               
Query: 304 tgcccccctatctctctccccacttaaacctttttt 339
           ||||||||||||||||||||||||||||||||||||
Sbjct: 42  tgcccccctatctctctccccacttaaacctttttt 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1013
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1003
Effective search space:   605812
Effective search space used:   605812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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